Array 1 82755-83741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUWA010000019.1 Escherichia coli strain R412 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82755 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 82816 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 82877 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 82938 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 82999 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 83060 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 83121 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 83182 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [83206] Deletion [83223] 83224 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 83285 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 83346 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 83407 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 83469 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 83530 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 83591 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 83652 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 83713 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7813-9061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUWA010000042.1 Escherichia coli strain R412 contig00042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7813 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 7874 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 7935 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 7996 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 8057 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 8118 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 8179 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 8240 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 8301 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 8362 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 8423 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 8484 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 8545 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 8606 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 8667 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 8728 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 8789 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 8850 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 8911 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 8972 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 9033 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //