Array 1 193290-194782 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPML01000004.1 Salmonella sp. S039_44712 NODE_4_length_373895_cov_101.309518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193290 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 193351 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 193412 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 193473 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 193534 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 193595 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 193656 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 193717 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 193778 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 193839 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 193900 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 193961 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 194022 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 194083 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 194144 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 194205 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 194267 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 194328 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 194389 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 194450 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 194511 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 194572 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 194633 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 194694 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 194755 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210914-212756 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPML01000004.1 Salmonella sp. S039_44712 NODE_4_length_373895_cov_101.309518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210914 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 210975 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 211036 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 211097 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 211158 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 211219 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 211280 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 211342 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 211403 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 211464 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 211525 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 211586 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 211647 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 211708 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 211769 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 211830 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 211891 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 211952 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 212013 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 212074 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 212135 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 212197 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 212258 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [212300] 212300 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 212361 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 212422 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 212483 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 212544 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 212605 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 212666 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 212727 29 96.6 0 A............................ | A [212753] ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //