Array 1 183467-181215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIFL01000004.1 Yersinia pseudotuberculosis strain PT682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 183466 28 100.0 32 ............................ CCAAAAAATCGGGAATATTAAACGCGGTTGCA 183406 28 100.0 32 ............................ TGAGAGCCTCACTGCGCTGTCGGCGGCACAAT 183346 28 100.0 32 ............................ ACTAGAGGTTTGATTCTTTTATTTGGTAGTCA 183286 28 100.0 32 ............................ GTGGACACAAAAGCATTCAAATCATACAGGGC 183226 28 100.0 32 ............................ GGGAACCCGTGAGAAGCTCCCTTGGTTCTCAT 183166 28 100.0 32 ............................ GTATTCAACGGTGTCAGTCGGTGATGCCGAAA 183106 28 100.0 33 ............................ CCAGTGTCGAGCGAGAAATAGACATCGGTTATT 183045 28 100.0 33 ............................ CTCGAACTTCGGCCTATCTGTTCACGTAATACC 182984 28 100.0 32 ............................ AATAAAATCATCAGCCGAGCCTTTAATGTGTT 182924 28 100.0 32 ............................ TTGGCCTGCCAGCAGCGCTCGAGTACCCTCAC 182864 28 100.0 32 ............................ TTTCATGATCGCGAGCGGATACACCACGTAAT 182804 28 100.0 32 ............................ ATTTAAAGCGTGAACAATAGATATGCATAACC 182744 28 100.0 32 ............................ TGTCTCCACCCAGTTCACGCGCTCATGAGGAA 182684 28 100.0 32 ............................ TATCCAGAGCGCAATCCTGAATTTGCGATTGC 182624 28 100.0 32 ............................ ACTAGAGGTTTGATTCTTTTATTTGGTAGTCA 182564 28 100.0 32 ............................ GTATTCAACGGTGTCAGTCGGTGATGCCGAAA 182504 28 100.0 33 ............................ CCAGTGTCGAGCGAGAAATAGACATCGGTTATT 182443 28 100.0 32 ............................ AATAAAATCATCAGCCGAGCCTTTAATGTGTT 182383 28 100.0 32 ............................ TTGGCCTGCCAGCAGCGCTCGAGTACCCTCAC 182323 28 100.0 32 ............................ TTTCATGATCGCGAGCGGATACACCACGTAAT 182263 28 100.0 32 ............................ ATTTAAAGCGTGAACAATAGATATGCATAACC 182203 28 100.0 32 ............................ TGTCTCCACCCAGTTCACGCGCTCATGAGGAA 182143 28 100.0 32 ............................ GATGAGTGCACAAAAGATGCAATTTTGCTTTA 182083 28 100.0 32 ............................ AAATTAGATAAATATATCTCACGAAATGATGT 182023 28 100.0 33 ............................ GCGACCCGATTCCAATCTTTAAATCTGGCTACG 181962 28 100.0 32 ............................ AGACTATGCGATCATTACGGGGTAATCATGGC 181902 28 100.0 32 ............................ TCAGCGTAATCGGCACTATGACCGCTCATCTC 181842 28 100.0 32 ............................ ACAAGACATTGACCGAGATTAATTGTATCGTA 181782 28 100.0 32 ............................ TTTACGAAGATATTCCCCGGCAATTTCAGCCA 181722 28 100.0 32 ............................ ATTGATATCAATCAATCCATCTATCACGCCAG 181662 28 100.0 32 ............................ TTGCGGAGTTCAATCACGTAAACCTGATTGTT 181602 28 100.0 32 ............................ ATCTTCTACCTCGGCTTTTAATTCCTGGACTT 181542 28 100.0 32 ............................ GACACGTTGGATGAAGCACAACAATTAATTAT 181482 28 100.0 32 ............................ TGTAAATTCATAAGATCTTTTAAATAACTCAA 181422 28 100.0 32 ............................ TCGAATATCTGGGTGGTCTTGGCCAGCACTTC 181362 28 100.0 32 ............................ AAGCACAGCCGCAGTGCTTGCAATGTCCACGG 181302 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 181242 27 89.3 0 .....................CC.-... | T [181217] ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACG # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 65499-63851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIFL01000024.1 Yersinia pseudotuberculosis strain PT682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65498 28 100.0 32 ............................ TTTACCATATGAGAAACGTTTCACAAGTGAAA 65438 28 100.0 32 ............................ ACTGTGAAAGATGGTCTAATATAGATTGCGAT 65378 28 100.0 32 ............................ GATGGTCTGGCGAACCCAAACGGGGAAGATGT 65318 28 100.0 32 ............................ TTGCTTATTGACCCAAATGAAAATTTAACCAA 65258 28 100.0 32 ............................ CGAATATGCGCAATGCAATGCCATATTTTTCT 65198 28 100.0 32 ............................ ATGACTGAATTTCAGGAGTTGATTAAAATTAA 65138 28 100.0 32 ............................ CAGATACCTTTCCGTGGTGGGGGAGTGAAACT 65078 28 100.0 32 ............................ GCGAAGAAATGCGGCTCCAAGTGAACCTTCAG 65018 28 100.0 32 ............................ ACTGGAACTGTTGCAGAAGGCGCGACAACTAC 64958 28 100.0 32 ............................ TACTTTTAGGCGCTTTTTTTTAATAAATGGAA 64898 28 100.0 32 ............................ CAGATACCTTTCCGTGGTGGGGGAGTGAAACT 64838 28 100.0 32 ............................ GCATCGTTAGGGTGGTCACGGTCATTGGCTTT 64778 28 100.0 32 ............................ ACAGTTACTGCTTAATATGAAGCCCCGCGAGG 64718 28 100.0 32 ............................ AAATCTGCGGTAATTCCCGCCCAGCACAAATG 64658 28 100.0 32 ............................ TTATCGGAATGCGCAGACCACCCAGCCCTCCA 64598 28 100.0 32 ............................ AAAAGGAGCACTAGATATCCCGTTGTTTCTAG 64538 28 100.0 32 ............................ GCTAACGCCTGCGCGATTGTTGCAGTAGGCAT 64478 28 100.0 32 ............................ AGATGTTTCAAGCCCAATAACCATCCCGGCAT 64418 28 100.0 32 ............................ ATAGCAATGGTGGCTTATAAGCCTCGTTCAGA 64358 28 100.0 32 ............................ ACCTGCATACGGTAGAAGTTTCTCTGTGACAA 64298 28 100.0 32 ............................ AACTTTAAACATGTGAAATTTTAGAGGGTTTC 64238 28 100.0 32 ............................ ATATGAATGATTCAATTGAGACTAACCAGCAA 64178 28 100.0 32 ............................ CGGGTGAAAAGTCGGTACCTGCGAATCGGCAG 64118 28 96.4 32 ...........T................ TATACACGCTGTGCTCTTTATACTGAAGTTAT 64058 28 96.4 32 ...........T................ ATGATGTATTTGCTATCTTGCTAGCAGTAAAC 63998 28 100.0 32 ............................ TGACATCATTCTCAGCCAAGTGGCCAATCACG 63938 28 96.4 32 ...........A................ ACTTTAATTTGCAGATCTGCAAAAAGGGGACG 63878 27 85.7 0 ...................A-.A.T... | C [63854] ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGGCCATGCGCTGATACTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACAGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGCGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGTTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGTCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //