Array 1 141629-141080 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOV01000003.1 Coprococcus comes strain TM07-19 TM07-19.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 141628 30 100.0 35 .............................. AATCCAGCAATTGCATTTAGCGACCATCCTCTTGC 141563 30 100.0 36 .............................. GATGAGCACTCCGTCCGTGATCCGGATCTCATTGTT 141497 30 100.0 35 .............................. AATACGAAAGCTACGGAGGAAATTATGAGACGTTT 141432 30 100.0 35 .............................. GTGGAGAATTCCGGTTGGACAGACTGGACAAAAGC 141367 30 100.0 34 .............................. TCTTCTTGCTTCTACACCTTTCATTGCTATCTCA 141303 30 100.0 35 .............................. CTAGGGTCTAACTTGATTGAACGTCCAGAAAAGAA 141238 30 100.0 35 .............................. ACACAAGGGGAAAGTTATACACCTACAGCGCAAGA 141173 30 100.0 34 .............................. TTCGCTCGGCTCCCAGATCATCAATGATAAGCAA 141109 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 35 ATTTCAAAACATCTCATGTTATTGTTTATC # Left flank : CGTACCTTCTTCACCATAGCCACGATATCCGATCCGCAAAATTGCGAACTCATAGCCTGTTGCTTTCACCTGCTCCCAGTCAATATCTCCCTGAAAAACAGATACATCTACACCCAGCCTTGAAGTATATTTCTTATCCTCATAGCTGATCTTATTTTCATTTTTTACAAAAAGTGCTTTATCATACGGATTCTTCGCAACTGCTTCATTGATTTCCACCGTATAACGCTCTCCGTGTGCATCTACAAAATCAAGCGTATTTTTCTCATCTGTACTTTCCGCATTTTTTGCATCCGCAGAAGTTTCTGCTGTTTTCTTTCCAGAACATCCTGCAAGCAAAGCTGCTAACATTCCGAAAATAATCCATCTTACTTTTTTCATCCATTCTCCATTTTTCTTCGTTATATTTTCCACAGATTCTAAAATGTAAACTGTGTATTGCTCCACAAAAGGTTATTATTTATCTCTTTTCTCTTCAAACCTGCAAGTGCAATTTTTTT # Right flank : CCTCGCATTTCCGCGTTTTTTAGTTTCTCCCCTCCCCTTTTTCCCCTTATATTTTCTATATTTCTCCATTTTTTACCAGCCAACACCCTTATCCTGGACCGCCCTACTTATCATCCCATAAATCTCTTAATTTTTCAAGCTTTCCTGGATTTTTCATTCTTTTTCCGCCTGGTAAAAATCCTATAATTATATCATTAAACTTTCTCCTGTTACCTCCCCTCCATTTCCCAAAACTTCTTCTCCAAACACATTGTCATTCATCAACTTGATAATGCAAATAAAATCTTCATCCTTGTCTATTACCTGGTTCAAATCCTTCCGCAATTGTATAAACTTTGATGGCGTCATCTCTCCTCTAAATACAGACTTTTGAAAATGTGAAAGATACTTTTTACAGATCTTAAACACTTTCTGAACTCGTTTTTCATTCACATCATAAAACAAAAATGCATAATTATAATTCAATTCTTTCTTCTTTTTCATTACATCCCTTCTTTCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACATCTCATGTTATTGTTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 42867-43563 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSOV01000006.1 Coprococcus comes strain TM07-19 TM07-19.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42867 36 100.0 30 .................................... CCTTCTGTTTTTTCATCTCTGAAATTCTTT 42933 36 100.0 30 .................................... TCAGGTTCTGCAGATCCGCTTTGCTCCACT 42999 36 100.0 30 .................................... TGGAGTGCAAGGAAACGCATATGATTTTGT 43065 36 100.0 31 .................................... TCAATCAGGTCTTTTACTGCTTTCAGGTTGC 43132 36 100.0 30 .................................... TATCCGTGATGAGATGCAGTCCAATAATAC 43198 36 100.0 30 .................................... TTCTTTTCTGGATTTCTGTCCATTTCATAA 43264 36 100.0 30 .................................... ACTTCCAACTGTTGTTATAATTCCTATAAT 43330 36 100.0 30 .................................... AGAACCACAAACAGATACAGTAGATGCTAT 43396 36 100.0 30 .................................... CATAACACCAGTAAATAACGGAACAGTGCA 43462 36 100.0 30 .................................... ACCTACGTGGTAAAAGAAGTAAAAGCACCG 43528 36 88.9 0 .....................A...A...T.....T | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 99.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAGC # Left flank : AATATTAAATAAATTGTATACAGAATTAGAGCAACTGTCAAAATCGGAAATAATGTATACGAAAACACTTGAATTTACTGGAAAAATACAGGAGTATATGCTGGAATTGGAGCAAAATACAGAGTACATTTTGGAATTTGATATGGACTTAGATATGACAGCATTATTTAAAACTGTAGGAATCCGACACGAAGTGCAGGAAACCGATTTTTTTGAGCGGTTGATACGTTATATAAAAATTACTGTAAATGTTCTTTCGACGAAAGTGTTTGTATTTATCAATATTAGAAGTTATTTGACAGATTTACAAATGCAGGAATTGATCAAGGAAATAAGTTATCAGGAAGTAAAAGCTTTATTTATTGAAAATCAGGAAAGAAGTTGCATGGAAGGAGGAAGGCGATATATTATAGATACAGATGGATGTGAAATTTATTAAATAAAGTATGCTTGAGTACCTTGTTTTATGCAGATGATGGCATTTCATTTTTGAATTTGAG # Right flank : TAATGTAGCTACGTTAAGCGAACGGGAGAATGTTTGAGAATGATGCAAAGATATGGTATTAAAAAGTAAATTATATGTAATGATAATGATAGAAGAGGAGGATAGATCAATGTCATCAGCAGACAAAATTTTAATAGAAGTATTGTGTGGCATAAAAGATAAAACTATAAGATTTGTAGAACTGCAAAAATTACTGGAATGTTTAGGATTTGAATGTAGAATAAAAGGAGATCATTTTATATATTACTCAACTTTCCCACCAGTAAATCTGGTGTAAACACTTGATTTTCAAGCAAAGTAATTGAATAAATTGATGCATTGACATGAAAATAGCATCTGACTTTTGGCATAATTAAATCTGGTGCTAGAATCACCACAAAATAAAAAACCAAGCAAGAAAGGTGCTGATTTAATGATATACCATACCCACCAAAATGACCATACCGAAAATCAATTTTTTCATGCATTAAAGGAATTTCAGATTGCAAAACTGCTTCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //