Array 1 107108-106284 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXA01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2862 NODE_1_length_546269_cov_4.41346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107107 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 107045 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 106984 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 106923 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 106862 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 106801 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 106740 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 106679 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 106618 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 106557 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 106496 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 106435 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 106374 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 106313 29 96.6 0 ............T................ | A [106286] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124371-123367 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXA01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2862 NODE_1_length_546269_cov_4.41346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124370 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 124309 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 124248 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 124187 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 124126 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 124065 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 124004 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 123943 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 123882 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 123821 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 123760 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 123699 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 123638 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 123577 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 123516 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 123455 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 123394 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //