Array 1 138711-135750 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHZ01000007.1 Pseudoalteromonas rubra strain W3 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138710 29 100.0 32 ............................. AATGAATTAATACATGTTAACGCTGAGGTGGA 138649 29 100.0 33 ............................. GCTCCGTCCTGCGTATCTCTGGCAAAATCCAGC 138587 29 100.0 32 ............................. TAATGGACAATCACCTCAGCAGGCCCGGCCTG 138526 29 100.0 32 ............................. AACGACCCGCAGGGCAACCCAATGACCCCGGT 138465 29 100.0 32 ............................. CTGTCGTCATAACGCCTCCTAAAATGCGCTGT 138404 29 100.0 32 ............................. TAGAGTTTTTCCGTGTCTATGAGGGAGGGAAA 138343 29 100.0 32 ............................. AAATGGCCCTTGAGTATATTGCCGCCTGCGCG 138282 29 100.0 32 ............................. GCGTTCGGCGCGAACACGTTGCCCTTTCGTTT 138221 29 100.0 32 ............................. CCGTGTCAGGATCATCTCTACACACAACGGGA 138160 29 100.0 32 ............................. GCGATTTACTTTTCTGAACAGGTCAAAATCGT 138099 29 100.0 32 ............................. TGATCCGTGAGCAGGAATTAGAACGCGCCCTC 138038 29 100.0 32 ............................. TGAGAGCGACCCATCCCCTTCGCGCCTGACTG 137977 29 100.0 32 ............................. ATTTTAGCCCACTCCTGCGCCATAGTACCGGC 137916 29 100.0 32 ............................. GTAGTAATATGCCCGTGTTCCATATTCTATCC 137855 29 100.0 32 ............................. ACACAGCTGAGTAGCCCGGTACGATATGGTGA 137794 29 100.0 32 ............................. GGTTTAAAAATAACACTGAACCTGTAGTATCA 137733 29 100.0 32 ............................. TTAACTGCAATGTTTGACGTTGATTTATCTAA 137672 29 100.0 33 ............................. TGCTTTTCAACAATGTTGTTTGCCACCTCTACC 137610 29 100.0 32 ............................. ACCTGTTCTATTTTATATTCGAAATCTGTATG 137549 29 100.0 32 ............................. CGTTCTTCTTCACGCGCTAATTCAGCGTTGAG 137488 29 100.0 32 ............................. GCTTTCTTGCGTGGTGATGGTTCCGCAAATAT 137427 29 100.0 32 ............................. TCCGTTCTCCTATCCCGTATTCCTCAGCAACT 137366 29 100.0 32 ............................. TGGCGTGAGGACACGCCACTCATTCTGCACAA 137305 29 100.0 32 ............................. CGCAATAACAGCGGCGTGCGTTTATCTTTAAG 137244 29 100.0 32 ............................. TTGGCTGAGCTTGAAAAAACCATCAACGCTAA 137183 29 100.0 32 ............................. GTCCGGCACTATCACAGCACCTACTGCGTTAA 137122 29 100.0 32 ............................. TTATACGAGTATTTCACCGGGTGAATGTGACG 137061 29 100.0 33 ............................. AGGTTGCTGAGTCTGAAATTAAGCTTGCTGAAC 136999 29 96.6 32 ............................A CGTCATACACTTCTACTACTCTCTCAGGGTCC 136938 29 100.0 32 ............................. CTTACCCAATATGGATAAATCAAACCGGTAAA 136877 29 100.0 32 ............................. TTATAGCCATCGCGTTAATCCTTCTGGTAGCA 136816 29 100.0 32 ............................. CGGTATTGTTTTGGATGGTCTCCCTAATTTTT 136755 29 100.0 32 ............................. TCATCTGCTGAGGTGGTTTTACCTTCGTCGAT 136694 29 100.0 32 ............................. GTGCCAGGCAAATGCAGCAGGCGGCGTTGGAC 136633 29 100.0 32 ............................. GCAGCGAAAACACCAACACTTGGTACGGAGGT 136572 29 100.0 32 ............................. ATATATTACGCAACATCCCTTACTACAGATAT 136511 29 100.0 32 ............................. CGGATGCAGAAGGTAAAGCAAATGCCACCCGT 136450 29 100.0 32 ............................. GTGATGAAAATGAGTTCGTCAGGCTGGCTAAT 136389 29 100.0 32 ............................. CCCTCTGCTCCATAAATCGGTAAATTAGGGTC 136328 29 100.0 33 ............................. TGGCGGGTCTCCAGGGAATCCGAACGAACATGA 136266 29 100.0 32 ............................. CAACAGTTTGGTCGTGCACTGCGAGTCATTGA 136205 29 96.6 32 ..............T.............. CCCCCGCAATAGCGCATGGCACAGGCCAAAAA 136144 29 100.0 32 ............................. TAGATGCAAACGGGGTGGTTGCTGGGGCCGGG 136083 29 100.0 32 ............................. TGATTCAACACCTTCATTTTTTGCAACGTCAG 136022 29 100.0 32 ............................. ACAACGAGCTAAACGGTTACCCGGCGCATTCA 135961 29 96.6 32 .............A............... ATGATCGCAGCGGTTGAAACTGGTGATTTTGA 135900 29 100.0 32 ............................. TGCATTCATTCCATCACCTCCGTCCCCTCAAA 135839 29 100.0 32 ............................. TTATCCGTGCAATGAGTGTTTACATGGAATCT 135778 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.8 32 GTGTTCCCCGTACGCACGGGGCTGAACCG # Left flank : ATTGGCGATGAAGGTCATCGCAGCGGAGGCCCACTATGAGTATGTGCATGGTTGTGACTGAGGCAGTACCACCTAGGTTAAGAGGCCGCCTGGCAGTTTGGTTGCTGGAGATCCGTGCAGGTGTGTACGTGGGTGACGTAAGTAAACGCATTCGCGAAATGATCTGGTTTCAAGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCCTGGGCAACCAACACCGAGTCGGGTTTTGATTTTATCACCTATGGTGAAAATGCTCGAATGCCGGTGGATTTTCAAGGGCTAAGGCTGGTGAAGTATACCCCAAGAGCCGATGACAATCAGGGAGGGGATTAACGAATTATTCCTTCATTCTATCTGTGATTTATTGCTCTTTAACAAGTTGGATATTGAGATTTAAAAGCTCAAAAAATAGATATGTTTGTACCCAATATTTTTGGTAGATTTTTAAGTGTATTTTTTCTTTATAAAAAACAAGTATATAATTTTAGA # Right flank : ATGGAAAGGGTTAAAAAGAGCTGTAACTCATCCATGAAGCAGCGTCCTTCGGTCATCTCGATAATTGCTCCTGCATCATTCTACTTCCCCATATTCATGTGGGTCCATGACCTCTCCTCAGCAAGCTGCGAAACGGTGTTTCGGTCTTGCTTCGCCCTTCATTCACGAGCGTGTGGATTGAAACGTATCAGCTGAAATGGCGCGGGAAAAACCGACAAACCAACGTACGATGAGGGGCAAGTGTTAATACAATGATAGGTATAGATAATTTCTTACAAAATTGTGCTAAGAGCGGGTTAACTCCGCCTTGCAATGCTTTTTGTGATGAGAGATAGTTCGGCCTTAAAAATATGAATAATAACAATATTAAGGATAGTAGGGATGAAAAAGAGCGCGTTGGTGTTGGCTGTGTCGGCGGCGTTGGTTATGTTGGGCGGTTGTACTCAGCATGTCAGCTCAAGCGATAAGAGTGTGCATGCTCAGGTGCAGCATGGCCTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 151290-149063 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHHZ01000007.1 Pseudoalteromonas rubra strain W3 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 151289 29 100.0 32 ............................. TAACACAATTGGATTAGTAGCTCTGCGCTTGT 151228 29 100.0 32 ............................. GGGGCGCTATGTTAGAAATCAGCAAATTGAAT 151167 29 96.6 32 ............................A GATGCAGCCAGCCTGCTTTGGGGCTTGTTTGG 151106 29 100.0 32 ............................. GCCCAGCCAATTAAACTATTATGGCTGGGCCT 151045 29 100.0 32 ............................. CTGCAACCCCCGTTTTTTTACCGTCAGGCAAT 150984 29 100.0 32 ............................. GTTGGCCATAGGTTTGCGAGCCAACTTTTTAC 150923 29 100.0 32 ............................. CTGTAATGCCTGCCAGTACTGATCCTCAATAT 150862 29 100.0 32 ............................. CTAACGCGCCACTTCGTCCGCCACAACACTTG 150801 29 100.0 32 ............................. ATTTATGTTGCAGTTGGTGCCATTTACGAGAT 150740 29 100.0 33 ............................. GTTTTCGAGGTGGTCATTCATGCTGCACTCTCC 150678 29 100.0 32 ............................. CGCTTTGTTGCGCGCGCAGGCTATCAACGTGT 150617 29 100.0 32 ............................. TGATCTGAATTGAGCAAAAAGACGGGCAGCGC 150556 29 100.0 32 ............................. ACCCCGGAGGGCCATGAAATATACTCGCTGCC 150495 29 100.0 32 ............................. GCAATGTGACCATTGACGAGGCGGCGTTTCAC 150434 29 100.0 32 ............................. TTATCCTGGACGCATTTTGATAGCATTTAATT 150373 29 100.0 32 ............................. TCAAACATCAAATTCGCAGCTAACAAACGTTC 150312 29 100.0 32 ............................. GGTTATCAAATTTCGGACGAATGGCACGATAT 150251 29 100.0 32 ............................. CGATGACCAAAATGCCGGACTACTATGTCCAA 150190 29 100.0 32 ............................. CGCTGGCGCTATCGCACAACAGAAAAAACGGC 150129 29 100.0 32 ............................. AAACTTTCGTGATTGTGTGTTTCGATGTTGTA 150068 29 100.0 32 ............................. TTGAATATGATAATAGCGCATATAGCGCTAAT 150007 29 100.0 32 ............................. AAAAATCGTTTTATGGTGGTGAGCTGAGCGTT 149946 29 100.0 32 ............................. AGGTATGCATTTTATAAGTATCCTCAGGGGCA 149885 29 100.0 32 ............................. AGCTTATGGGATGGCCTCTACAGCAATTGGAG 149824 29 100.0 32 ............................. ATCATCCGGCCTGGCCTGAGATTAAAGACGCT 149763 29 100.0 32 ............................. GTCGGGTAGTGCTAGACCTTCAAACTCTTCGG 149702 29 100.0 32 ............................. TAAAAGGTGGACTGCAGGACAAGTACCAAACA 149641 29 100.0 32 ............................. AGTACAGCCGCATGAAAGACAGTGATTTTAGC 149580 29 100.0 32 ............................. GCCGAAGCTCGCCCACGCATCACACTGGGCCA 149519 29 86.2 32 ..........C.G.TG............. AAATCATTCTGTTGTTGAGTGAATTGCTCATA 149458 29 82.8 32 ..........C.G.TGT............ CCAGCCCATTCAATATTAAATTCAGCAAGTGA 149397 29 89.7 32 ..........C...AG............. AAAGGTCGATTGCGGCAAAGGGGGATATTTTT 149336 29 100.0 33 ............................. GGTTCGATTAAAACGTATGTCGAAGGTTACGAC 149274 29 96.6 32 ............................T TAATAACAGATCCCCAGCACTGGCAAGCCCAA 149213 29 100.0 32 ............................. CCAGAGAGCTCTTGAGAGACGCTGTGAAGTGG 149152 29 96.6 32 .C........................... GGCAATATCATTGTCCTGGCGGGATGGTGGTT 149091 29 86.2 0 ..........C.G.TG............. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.2 32 GTGTTCCCCGTACGCACGGGGCTGAACCG # Left flank : TTCTGGTTCGACACCCTCCAGTTGATCATACTCAACGTGCTGTTCCCAACCCTGACCGCATTGCTAGGGTACGTATTTGGCACCAGCAGGAATAATGGGGCGTAAAAAGGGTGGAAGAATGCAGGGTTTGTATGTGGTTGCAAACTTTGTACGACAAGGGCGAATTCTGGCTTGATGGCCACTTTCTTTATCTGTTTGGTTTTTTTACAACGGTGTGCTTTGCCGTAATTGAGGCCGAATGGATGCTCTTACTCACCTCGCCGCTGGAGGCATTTTTAGCCGCGATACTGCTAGGCCTGATCTTGTTCTGTTTGTTTATGACCCTGGCTATAACTCTTTTTTCCTGTCTGCTGTGTTGCTACATTAAACAAATGCTCTTTAAAAACATGACTTGATAGTGAACAAAAATCTGAAAAAGCAGGGCCAAATTTGTACCCAATATTTTGGGTAACTTTTTCCATGCGATTTTTCTTTAGTGAAAACAAGTATATAATTTTAGA # Right flank : GTGGTTTATATGAGGTGTGGCGGCAGGGCGAGACTCGAACTCACATCATATACAGACTACATATAACCGTTACCCATTGGAAACACTGCCGCCAGGTTCGATTATTGCTCAAGTTAACCAGCTTGTGAAGCGACACTTCACGCTGTGAATCAAGGTAGTGCAGAGAATATGTCAAAGTGGCGGCAGGGTGAGAATCGAACTCACATCACTGCAACACAGCCCCTTACCTATCGGGGTACACTGCCGCCAAAACTGATTATTAATCTACCATCAAAAAAATGCCAGTACGATTGTTCTGGCAGTTTGTCTCAGGTCAATGACTTGTACTGTTGGTTTTGATACATTTATTTCACGATAAGTTTACCAAAGTGTTTTATGCAGGCTAAGGAAGAGCAATATTTTCGGTATATTGAAGCGGTGTTGTTTTGGCAAGGAGAAATCCAAACCGGTACTTTCCAGGATAAATTCAAGCTTTCACGGCCCAGTGCACGGCGTTATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //