Array 1 192376-192644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZYL01000001.1 Pluralibacter gergoviae strain 40874 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 192376 28 100.0 32 ............................ TTGAGCGCGAAAACGAGCAGATCGGGCACCGA 192436 28 92.9 33 ...T.........A.............. TTTAAGCCCCGAAGAAAATCACACTCGCTGTAA 192497 28 100.0 32 ............................ TCGGATGTAGCCTGAAGTTTCCACGCTTAACT 192557 28 100.0 32 ............................ GTAGTCATCGTCAGATGGCATACGAAAGTAGG 192617 28 78.6 0 ..G..................CCCA..C | ========== ====== ====== ====== ============================ ================================= ================== 5 28 94.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTTGGCAAACTGGTGGACGGCGGCCAGGTGACGGTCGATCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAAAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTTACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTCTGTGGCCCGGTCCGGCCCGGCGGTGAAAATGAATAGAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGAATGCGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACATATTGATTTTCAATATGCATTTCAGGTGGTAATAAAAAAGGGTCTGCGCCACCAGAATCTGTTTTTTCTGTTTTATAACAGTGTGATAGAGTATTCGATGGTTA # Right flank : CTCCGGACATAAAAAAGCCGGGAATAAACCCGGCTTAACTTTTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAATTTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGAGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49032-49487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZYL01000024.1 Pluralibacter gergoviae strain 40874 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49032 29 100.0 32 ............................. GAGCTGGTCGCTGAACTCAAAGCGTTGCCAAA 49093 29 100.0 32 ............................. AACATCCATCCTGAACACCACCACGCGCCGTA 49154 29 100.0 32 ............................. CGCAAAGGCAAAGTAGCTGGAATGCTGATACC 49215 29 100.0 32 ............................. GGCGCGATGGCGATATTTTCCGCACGTCAGAA 49276 29 100.0 32 ............................. CATGTTTGCGTGCGGGGAGGTCATCAGATAGA 49337 29 100.0 32 ............................. CACAGAGTCAGCCGCAGAGTTGTTGGTGCGCT 49398 29 96.6 32 .............C............... GACTGGAGCAGCCCGACAGCCCGCGAGTATAT 49459 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGAAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGAGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTACTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGGTATTTATGGGGCTACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : GATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTGTGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTCATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGCATCGAGGCGTTAAACGGCTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCATTAACACCGGTGATTGAAATCGACCAGATTGAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59725-60059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZYL01000024.1 Pluralibacter gergoviae strain 40874 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59725 29 100.0 32 ............................. TTCGGTATCGGTCGCGATGAAATACCGACTCG 59786 29 100.0 33 ............................. CAGGCAGCAGGCGATAGCAAAGAGAAGATCCAC 59848 29 100.0 32 ............................. CATGCGCATACCAATATCAACGATGCGATACG 59909 29 100.0 32 ............................. CCTGACCGGAATCGTTGACGTGTTTCATTATC 59970 29 100.0 32 ............................. TGGCATGGCAGCGTAGAGGACGGTATCGCCCA 60031 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCGCCCGAGCCGCCCGCCGATGCACAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCCGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGAGTCGGGTTTTGAGTTTCAGACTTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : GCGTACGGCCAGACGGTTCTGGCTCAGTTCCAGCGTGTTCCCCCGTACTTACGGAAACAAAACCAACCTAACCGTGCCGCAATAGCTGACAACGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCCGCACCAGCGGCAGCATTACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCGAGGCGCGGGTCGTGCCAGCTGGTGCCTTCGGGGAAGGTGCGGGACTTGGCCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCTTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCACGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCAGGGTTGGAGGCGGCCGGAACGCCCCAGCGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2511-1330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZYL01000075.1 Pluralibacter gergoviae strain 40874 contig75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2510 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 2449 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 2388 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2327 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2266 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 2205 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2144 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [2091] 2090 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2029 29 100.0 32 ............................. CCGAGATTGATTAAAGCAAAGTAACGGCGGTG 1968 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 1907 28 89.7 32 .....-......CT............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1847 29 96.6 32 .............C............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1786 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1725 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1714] 1663 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [1647] 1600 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1539 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1479 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1418 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1357 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //