Array 1 51245-52430 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSO01000009.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4370 NODE_9_length_178746_cov_3.38937, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51245 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51306 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51367 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51428 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51489 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51550 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51611 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51672 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51733 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51794 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51855 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51916 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51977 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 52038 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52099 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52160 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52221 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52282 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52343 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52403 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69100-70715 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSO01000009.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4370 NODE_9_length_178746_cov_3.38937, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69100 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69161 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69222 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69283 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69344 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69405 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69466 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69527 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69588 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69649 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69710 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69771 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69832 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 69893 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69954 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 70015 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 70076 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70137 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 70198 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 70259 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 70320 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 70381 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 70442 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 70503 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70564 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70625 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70686 29 100.0 0 ............................. | A [70713] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //