Array 1 51-216 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJX01000330.1 Methylocucumis oryzae strain Sn10-6 c330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 51 32 100.0 35 ................................ GTCGTAGATAACAGCATAAACACCGACTGCTGAAT 118 32 100.0 35 ................................ TAACTGTCATATACAGACGGCTTATCCACCTAACC 185 32 90.6 0 ....T......A...A................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 36 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : GCGCGTGGATTGAAACGCATAGTTGTCTCTAGTTTTGTAGGATTGCTTGAG # Right flank : CTACTCACATAGTTATGACGTTGGTTTTAACGGGGCGGCGAGCTGTTTGCCAAACACCCCATAATCAAAATTAGCTATGCCATCAATGGCGCGTTCATCGCGACCGGTTATAAAACTTAATCAGCGGGTTTTAGCCGAGGCCAGATGTAATAATGCCTCGCTTAATGTGGCTTCATCGATAAATTTCAGTTTTTCACTACGACCTTGGTATTCGACGATGACGACACCTTCTGTGCCTAGTTCTAATTCCCGTGCTTTTTCCGGTTCGTTATCGGGATTGACAAAATGAAACGCAATATTCGGTTTGGCTTGTTTATATTTGCTGATTAAATCGGTGATTTGTAAGCGTAACGGCGAGCCAGCTTGAATATAGGCCGTAATCTCTATGGCTTCGGGTAATGAGGCCAATAACGGTGCTTGCCTGAGATAACGAGTTGTTGCGTTGTGCGCTGACGTCGATTTGTATAGGAACTTTACTGTTAACCAAGCGCATAGCATGA # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 607-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJX01000084.1 Methylocucumis oryzae strain Sn10-6 c84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 606 32 100.0 32 ................................ TTTATGCGTAAAATAAATGCATAAAAACAAAA 542 32 100.0 32 ................................ GTTTATTTTGATGAGATAACGCCTGGTATCTT 478 32 96.9 33 ...............................A CGTTTCCAATGTCTCTTCTATAGCCTCTGGTGT T [457] 412 32 100.0 32 ................................ TATCGGGTGAGCTAGAGGTAGAAAAAGCAGTA 348 32 100.0 33 ................................ GAACCAGCATCTAGGAATAGCATTAAGTGGAAT 283 32 100.0 33 ................................ CAGTAGTTAAAAATATTTCCAAGCCAATAATTG 218 32 100.0 34 ................................ ATAGCGAGTGGCACATAGACCACGCGTCAATTAC 152 32 100.0 33 ................................ ACCTTCGCCAAACCCAATACCTGCTTCGTTGAC 87 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 9 32 99.7 33 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : TTTTATGGAAATAATGCAGAGGTATTTATGTTGATTTTAGTGACCTATGATGTGAGTTTTAAATCGGAGACCGGGCCTAAGCGTTTACGCCGTATTGCTAAACAATGCCAAGTGTATGGTCAGCGAGTGCAATATTCTGTGTTTGAAATTGAAGTGGATATGGCGCAGTGGACAAGGTTGAAAGATGCATTAATCAAAATTATCGATGAAACTGAGGACAGCTTACGCTTTTATTATTTGGGCAATAATTGGGAGCGACGTGTTGAACATATCGGCGCTAAAAAACCATTAGATTTAAACGGCTTATTGCTGATGTAATTCGTGTTGCGAACCTTAAGCGAGCATCAATAATGCCTTATGTTCGCATTTTTAAAACCTATTGATTTTTAAATATTTTTATTCGTTTTGAAAGTAGATTAAAATGTTGCCAGCAATTGTTTTAAGGCATTCGCGTAATAAAAGGCATTTTCTTTTGTTATTCATTGGCTTGGGCAAATGCG # Right flank : CGGCGCATATATCTATGCCTTTGTCGAGTTGTTTGGGTCGCGCCTCACGCAGGCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34445-34775 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAJX01000187.1 Methylocucumis oryzae strain Sn10-6 c187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 34445 28 100.0 33 ............................ CAGCCAAAAAAACACAAACAAATCAATTAGTTA 34506 28 100.0 34 ............................ CCGATGCTTGCAACATCGGCTTTTTTTTTTGTTC 34568 28 100.0 32 ............................ AGCCCGGCATTAGTTTGATATGCTGGCTTTCC 34628 28 100.0 32 ............................ GATTGGCTACCAATCGGCGCTGTTACACTAAT 34688 28 100.0 32 ............................ GCCCGTATCACCGCCCGTATCGCCGCCCGTAT 34748 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 100.0 33 GTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTCTTCTAAATGACTATCATGCCGCTGCATCCAAGCGAGTATACCAGCTTGATGGCAACCAAGAATCCGAACCGAGTAAGGATTTTGTCTTCACTGACATAAGCGCCTTACAAGCAGTGCGATTTAAACATTTTATGAAAGACTGCAACGCCATCCAAGGTGACCCAGCCGAGTTAAAGATATTGCTTGAACGAGAATATCAAGCTGCGATTGGCTTTCTTGAACACAGTCACCAAGACATTATGGCGAATTTCGACCCGAAAGTTGTTAAACTTCGCAAAAAGATGAAAGTGATTATCGCTGATGAGGCAGCAAAGGATTTGTTGTAGTTGTATTGAACCGTTATCAGCATAATGCTATTTTGACCAAAAAATTTTCTGCTCTTTAACAATGTAAATAAATTCATAATGTTACACGATTATGCTTTACAGATGGTAAAAAATAGGCTAATCCACTTGCAGCCCTTGTCGCAATTGGCTTCAAGGCTTTTTATAATCTGG # Right flank : AATTTCAAGTTCTTCTGGAACATCAAAAGCAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //