Array 1 568772-568325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHDF01000018.1 Escherichia coli 1-176-05_S3_C2 e117605S3C2.contig.17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 568771 28 100.0 32 ............................ AGCGGCTGCTGGTTGCTGACCTTAACCTTGCA 568711 28 100.0 32 ............................ GCTCGATTGAAAATGATTTTAATTTTGTCATT 568651 28 100.0 32 ............................ AGTTGAAAGAGTTTTACAGCAAATAGAAACCG 568591 28 100.0 32 ............................ AGTGTTTATATTCTTCGCCTAAAGTATTCCCC 568531 28 100.0 32 ............................ CGGTTAATCGGATGCCACCACCGCGCCGACGC 568471 28 100.0 32 ............................ CAGGGTTATTTGCACTATTCTGCCGACGAACT 568411 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 568351 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAGATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACCCCTCACCAAATTTTTGTTGCCTGACCTCAGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTTCAGGATTGTGACTGTACATGCTCTGGGCAAGTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGGCATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : ATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 153207-153955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHDF01000014.1 Escherichia coli 1-176-05_S3_C2 e117605S3C2.contig.13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 153207 28 100.0 32 ............................ TCCCTGAACGCCTCAAGAACGCGCCAACGTTC 153267 28 100.0 32 ............................ AGTTTGCTAATGAGACGGTCAAACTTCACCCT 153327 28 100.0 32 ............................ GTGCCGCGCTAGGGGGTGTGCGGCACTGGTCA 153387 28 100.0 32 ............................ CCCAGACAGATACCCATCGTTCCGGGCTTGCT 153447 28 100.0 32 ............................ AGTAAAAAACGAACCTCTGGCGGCACCACTCG 153507 28 100.0 32 ............................ TGTCACCCTCAGACGCTCGCCCTCTGCCACCG 153567 28 100.0 32 ............................ GTTCGAAATTAACGGCGCAACGGTTGAAACAA 153627 28 100.0 32 ............................ ACTGGCAACGCCTGCTGGTAACGAGATACAAC 153687 28 100.0 32 ............................ AAAAACTTTTCCTGTGAATCAAGCCAACCACT 153747 28 100.0 32 ............................ ACCATAGCAGACATGGAAGGGGTGAACAGATT 153807 28 100.0 32 ............................ ATCATGGCGGGGAAAATTGCCACCAAGTGCCT 153867 28 100.0 32 ............................ AGACACTCTCTGGTGGAGAGAAGCGGAAGATT 153927 28 89.3 0 ....................T...C..T | C [153950] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGTCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTGCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //