Array 1 115529-116420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFX010000001.1 Dickeya chrysanthemi strain A604-S21-A17 A604_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 115529 32 100.0 34 ................................ AACGTCATCTGTATCGGCAAATACGATAAGTCGA 115595 32 100.0 34 ................................ GCTATTGTTGAAGGTCGCCTGAACCTGACTGTCA 115661 32 100.0 33 ................................ AAGTGTCATAATTGCCAACAGATGAATGGCTGG 115726 32 100.0 33 ................................ ATTTAGAAGCAAAGCAGCTGGATTGCCTGATTT 115791 32 100.0 33 ................................ AGGTTAGGCAGTTAGGATTTTCAGCATTTGGCA 115856 32 100.0 34 ................................ TGGTCCTTACCGGCATCAGCCGGCTTCTCTGGTT 115922 32 100.0 36 ................................ CACATCGATGCGCAGCTAGCCACCTGGAGAGTGGCA 115990 32 100.0 32 ................................ TCTTGATCCTCTCCCTGATACCTCAGTAATCG 116054 32 96.9 34 ..............................G. TACGTCCAGCTGATGTAAACGGCACCGTTACCGC 116120 32 100.0 34 ................................ ACTCATTTGTCACCCGCAGCATCACCGCTGACTG 116186 32 100.0 33 ................................ AATGAGCTGCCCTTGCGACAGCCCAAGCCTAAC 116251 32 100.0 35 ................................ TCAATAGGCGTCATTATTGGCGGTGCTATATCCGG 116318 32 96.9 40 ........................G....... GACAGTGACGTGCGCTGCATCATCTACATCTACGCCCGAC 116390 31 81.2 0 .....................-AC....C.TT | ========== ====== ====== ====== ================================ ======================================== ================== 14 32 98.2 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGATACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAAGACGCCAACGGCCCCCGTCGCCTACGGCAACTGGCCAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTATTGCGCCAGAAGTTGCTGACCACCTACGACGAAAGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGTGATACGCTTATCGTGTAACACTGCGCCAACCTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAATCTTATGCGGTTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCCGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : TGATATGCTGATTCGTCGGTTAACGCGGCGACGGCGGTTCCGGTTCGAACAGCGGCAACGGTTTGCCGATGATATAACGGCGGCGCAAATGGGCGGATAACGCGTCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCATAACCGCATGTTCTCGGCATACACCAGCCCGATGCCGCCCGCGCCGACAAACCCCAGCACCGCGGCGGAACGCACGTTCGACTCCATTTGATACAGGCTGAGCGCCAGAAAGGTCGGGAATGATTGGGTGAAGATGCCGAAACGGTGTTTTTGCAGGCTGTTGGCGCCGACGGCGCTCAGCCCCCGGCTGGGTGAGCGTTCCACCGCTTCGTGCCCTTCGGCGTATAGCTTGCCGAGCAGGCCGGCATCCTGCATTAGAATCGCCAGCGCGCCGGACAACGGCCCCATACCCACCGCCCGCACGAAGATTAACCCCCATATCGCCATGTCGATG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 96860-97307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFX010000012.1 Dickeya chrysanthemi strain A604-S21-A17 A604_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96860 28 100.0 32 ............................ GTCTGCACCCGGCCGGAGCCTTCCTGTAACTG 96920 28 100.0 32 ............................ AGAGAAGCGTTCGGTGGAAAACCGACAAGCCG 96980 28 100.0 32 ............................ ATCATGTTGCGACCAATTCCATCGAGGTCGCC 97040 28 100.0 32 ............................ AGTGACCAGGCGCGGTCATCATCTGGAAAGCC 97100 28 100.0 32 ............................ TGACAGGTCGCCAAAGTACCGGCGCGCCCTGG 97160 28 100.0 32 ............................ AATTATCGGCACCCGATGTTCGCGATGATTTT 97220 28 100.0 32 ............................ ATGCTCTATCTCGGCTGGCCAACGGCGGTATG 97280 28 96.4 0 .........T.................. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCCATCAGCGCGCAGCGACGTGTAAGGCTTGTAATCGCCGGTGGTACACACTTTCAGCACGCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGCCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTACACGCCTGTCTGACAAAAACGCCACTGTAGCACGCCGTTTCCACCGATGCCGGTTTTGACCCTTTTTTTTCACTCCGTTATAACTCATTGATTTTTAATGACGATAAAGAACGACTTAAAAAAAGGGTTTCGCAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : ATCAACAGCGGCGATAAACGGTTTTGAAATCGGGTGAACTGCCGCACAGGCAGCGGTTGACGGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGATACGCGATTGCCTATCCCGCACGAAACCGCTCACCGCCCCAACATAAATCAGGCCGCAGCAAAATCCTTGCTGTTTACCAACAGCCCGAAAACACTATTCCGCCGCCAGTACCGACTGCGCCCCTTTGCGCTTTTTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 103058-102489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFX010000012.1 Dickeya chrysanthemi strain A604-S21-A17 A604_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 103057 28 100.0 32 ............................ CAAATACCATATGAGAGCTATTGCTTTGTTGC 102997 28 100.0 32 ............................ GGTCTGAACCAACGCATCCGTGATGCAGAATC 102937 28 100.0 32 ............................ CACGGAAACCACTGTTCGGGTAAAAGTGGGGC 102877 28 100.0 32 ............................ ACTCCGGCAGCTTTGCGCGGGCCGGTGACTCT 102817 28 100.0 32 ............................ AGTTGATCGCCGAGCTGATGACGTTGTAGACC 102757 28 100.0 32 ............................ GGTCACGGAGCGCGGTTCCCGGTCCTGTCAAC 102697 28 100.0 32 ............................ ATCGTCAGCTCCATATCGAGCGCCCCGGCCTC 102637 28 100.0 32 ............................ TGATATTGAGCAGATAGCGTGCCGAGCGCAGC 102577 28 96.4 32 ...........C................ AGTCGCGGCGGGCATTACGGATCACGTCGTTA 102517 27 78.6 0 ...........CAC.........-..CG | GG [102494] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCGCCATCACCGACGTACTACCGGTGCCAGCGGGTGCGCAGTACCGCACCGTGCGGCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGCAAGGGCTGGCTGACCGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGGGAAACCGATCGCCGGGGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACTATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGAAAAACGGCGATTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : GGTCTACTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAGGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAGGTAGCAAAGAAGCAACACGGTTTATCCCGCACGAAATGAACCACCGCCCTCTCATACATTCGACAAACGTATTTGTCAGCCATACCCCGGCTGTGTGTCAACAGCCCTATTCCTGCACAGGAATAAAAAATCCCCCAACCGTTGCCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAAGCGGCGGCGACGCGCTGTACGTTGTGGTGGTTTAACCCGGCGATGCAGACACGGCCGCTGGCGATAAGATACACGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 111637-112864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFX010000012.1 Dickeya chrysanthemi strain A604-S21-A17 A604_(paired)_trimmed_(paired)_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111637 28 100.0 32 ............................ ATATCGAGGGAGCGCTCGGGATGGTTGGCGGG 111697 28 100.0 32 ............................ ATGCTCACCAGTATGGTAGTCCAGAGCGAGTG 111757 28 100.0 32 ............................ CCTTTTTCGTGAGACTGCACAAATGAAGACCA 111817 28 100.0 32 ............................ TCGAACCTTGCATCGGCTCCTGATTGCATCCT 111877 28 100.0 32 ............................ AGTCGTAGAGTGGGCGATTGCCTGATACCTGT 111937 28 100.0 32 ............................ TGAATCCGTCCGCCAGAAGTGCGACCCGGTAC 111997 28 100.0 32 ............................ ACTTGGCTAACGAAGCCGTCAAGCAAAATGCA 112057 28 100.0 32 ............................ TTATGCGCGCCCTGTGGTGCGCATAGTGAAGC 112117 28 100.0 32 ............................ CGATGCCTGCTGCGCCACTGGAGCAAAACCAA 112177 28 100.0 32 ............................ TATGACGTAGGATATGCAGGGTCAAACGGCTC 112237 28 100.0 32 ............................ AGTCGTCCGGTGAAGTTGCACTGATTCATATC 112297 28 100.0 32 ............................ ATTGGAAGCACGCCGCTTGCGCATGATGGCAA 112357 28 100.0 32 ............................ AGTGGCGCCACAGATAGCGTTGACCATGCTCG 112417 28 100.0 32 ............................ TGTGGGAACGTGATGAATACACGTTCATGTCG 112477 28 100.0 32 ............................ GACGAAGCGAAGGAAAAGAAAAAGCCTGCACC 112537 28 100.0 32 ............................ TTGGCCATCTGGATCTGAACCTATGGTTGGAA 112597 28 100.0 32 ............................ TGAACATGATTAATGACCGGGATACTCCAGAA 112657 28 100.0 32 ............................ CCTCACTCGCCCGCGACATTATTGAAGGCATC 112717 28 100.0 32 ............................ GCCAGGTCCAGCTCAACATCCAGATTGTCAGT 112777 28 100.0 32 ............................ CGCACGCATGGGCAGCGGTAAAGTCACTTACA 112837 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAGGTACCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGCCCGCCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAACCCCACCCGCGTAATAACACGCAGGCTAATAATTGATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAGCCACAACGGGAAAGTGAATGGCGCCGAAAAGACTTTTCTTATTTTTATACCCTTTTTTTCAGCCGCTATTTTCGGTACTGAAAAATCAATCAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGACGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACAGGCTACA # Right flank : AAAGCAGATACTCAACACGCCAGTGTGTTGCCGGTAACGCGAATTATTTAGGTTATGCCGACTGATTTAAATTAAAACAGGGTTTCTTTTTATTACTTCGACCACAAATTCTACCCCCTTGGTTGACACTATTTTAAACCTTGACTACTACTTAACTATTAAGGCTAGATTGACGTCCACCCTTAACGGAAAAAGAAATGAATTGCACATTTTGTGCAACCAGAAATGGTCATCACCGGTAGCTATAACTAAATGCGAATAAAAAAACTGATACAAATAAATCTTTTGCATTTAATCCTATTCATTTCTCTTGCCAGTATGTTTGTTACGCTATTGAATAGCTATTTAACTTTTTATCACGTTCAAAAAAAACTACTGTTTGAACAAGCCACTAAAGTCAATGCCAGTTATTCGGCCAAACTCGCCATGACTGTGGATAATTTTTTTTCTGTTTCAGAAGAGCAATTATCTTATAGCGCCAGGTTGATCGTCAGTCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //