Array 1 62293-65546 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRV01000005.1 Collinsella sp. TF07-1 TF07-1.Scaf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 62293 36 97.2 30 ................G................... CAACCTCGCGACGCTCCTTATCGGCAATCA 62359 36 94.4 30 ................G..................T GCTCTAGGTCGGTAGTACAGTCCTTAGTAA 62425 36 97.2 30 ................G................... CAACAGTCCGCATTGCATCAGCGGACTAAA 62491 36 97.2 30 ................G................... CGACAACAGATATTCAGCATTCATCTTGCC 62557 36 97.2 30 ................G................... CAGGTCAAACGGGGTATTTCCAAAACTAAC 62623 36 100.0 30 .................................... AGTGCAATATACCTAATTTTTTTTGCACTG 62689 36 100.0 29 .................................... GCTTGGGCACGCTCGCCACGGTGCGGCCG 62754 36 100.0 30 .................................... GGAGGCAACAATGGCAATCACTCAGCGCGA 62820 36 97.2 29 ........G........................... GGGCTTGCGAGAGGTCTTTTTCTTTAGGG 62885 36 100.0 30 .................................... TGTTCCCACTTACACCACTCACGCATACCC 62951 36 100.0 31 .................................... TCAATGTAGATAAAGCCGACTAAATGCGTTA 63018 36 100.0 29 .................................... ATTTTGTCGAGCCTAACCGAGCCATGTTG 63083 36 100.0 30 .................................... TCTAGACAATGCGTGAGCACTGTCCTATAC 63149 36 100.0 30 .................................... TGTTGACTCCAAACTGGTTAGGCAGGCGGG 63215 36 100.0 30 .................................... ATGAGGTCAATTTGATAGAACGTATCAGTA 63281 36 100.0 29 .................................... CGGCCTCTGGACGCCATGTGCGCATGAGC 63346 36 100.0 29 .................................... GCGAGCTGGGTATATCACTACCAGAGGTA 63411 36 100.0 30 .................................... GAGGTATCAGGCAGGCGGTCGGCAACTGTG 63477 36 100.0 30 .................................... GGTATACCTATAGGCGCAACCCCCGAAACC 63543 36 100.0 29 .................................... AGATTGCCAAGCCTAACCACGCCGACATG 63608 36 100.0 29 .................................... CCGTGTAAATGGCTGGTTGCCTATGTTGC 63673 36 100.0 30 .................................... CTGCTTCTTATTACGACGCTCCTCTTCCAT 63739 36 100.0 29 .................................... GTATCTCCTGTTCTATCGATTGACGGATA 63804 36 100.0 30 .................................... CAATAGCTACGAATTAGTTAGCTATCGCAC 63870 36 100.0 29 .................................... TTTGACGATGAAAGCGGCAACGTACACGC 63935 36 100.0 30 .................................... CGTTGCATCGCATGAGACAAAAGCAGGGCG 64001 36 100.0 30 .................................... GAGACACCTAAACGGGAGGTATATATGGGA 64067 36 100.0 30 .................................... CCATGTTCCAGAACGACCTGATCGAGCTCG 64133 36 100.0 30 .................................... CAGTCATACCAGGGGACGAGACAGGTGCAT 64199 36 100.0 30 .................................... TGACAAACGCAAAGAAGGAGCGCGGTCGAA 64265 36 100.0 30 .................................... GTACCGTGTTGCATCCACTTAGGATGTCTG 64331 36 100.0 30 .................................... AGCACCGTATCACGCCTATACTCGTTGCAA 64397 36 100.0 30 .................................... GCAGGCCACAGCCGAGAACCTGACGCTAGC 64463 36 100.0 30 .................................... GACAATCGAGGGCCGTACGTACAGCTACGG 64529 36 100.0 30 .................................... TCCACCGCCTGAACACCCAGCGCACTATGT 64595 36 100.0 29 .................................... AGCATCATCCAGCACGACCTCCTGCTCGA 64660 36 100.0 30 .................................... GTGCCACCTATACCGGCAACATGGTCGAGC 64726 36 100.0 30 .................................... CGCATTGTCGCGTCCCCTTCCGGCGTGTCG 64792 36 100.0 29 .................................... GATTCGACCGCTTGTCGTGTGAAATTCGA 64857 36 100.0 29 .................................... AGCACCCTAACCGTGCTATTTTGATAAGG 64922 36 100.0 30 .................................... TCTCTTGCTTGGTCTAGTTTCCCGTGATGC 64988 36 100.0 30 .................................... TATAGTAGGTGAGTGGACACGTGATCGGCG 65054 36 100.0 29 .................................... TTGCGCTTGAGCGTCGCGGCAAGACCGTG 65119 36 100.0 28 .................................... CTATTTCTGGTTTTGCTTGTTACAAGTA 65183 36 100.0 30 .................................... TCGCACTCGTGGTCGGACGCTGCGAATTCC 65249 36 100.0 30 .................................... TTCGAGCCTGAACTTCGCGAGGCGGGAGCT 65315 36 100.0 30 .................................... CAATTATCACGCGCATCCACAGCGGAGCGG 65381 36 100.0 29 .................................... GCCATCTGTGCTGCTGCTCATGGGGACGT 65446 36 100.0 29 .................................... GGACGTGCCGCACGCGAGAAAAAAGAAAA 65511 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 50 36 99.6 30 GTTTGATTACCAGTTAAATCGACACTGCTCCAAAAC # Left flank : GCCGTTCCACCGTTTATTTACATCTGCCATCACGGGCATCGCCCGTGCGGGCTCGAGTCCCGCCGCCCCGACCAAAACGGGATCATCCCCGCGCGTGCGGGGAACAGGATTGTTTGCGCTCCACATGTCTTGACGGATTGGTAGGGCGCTTTTCTATGGGCAGAAGATCTGGTTATCGCTACATGATTGAGTTAAGAACCCTCACGAATTCCTCTGCCTGGGAGCGACTGCTCAGCCTATAGCCGTAGCCCGTCCGCAGCCTGTTGTTCAGAATCACCTGCTTGCCCTTGATCCTATAGACACCGGTGACGTCATTCAGGTAGGTCACCTCTATATGCTTGCCGAAGAAGCGGTTCTTCTTGAGCGTGGTAATTCGATTCGGGTAGATACAGATCTCCTTGAATACACCGGCACCCTTATCTCTGAACAGCAGCGTGTCGTTGTCCATTTCTATTCCTCCTTGTTGACGTTGGTTAGATTGCGGTCCGAACTGTCATATT # Right flank : CCATTGGAACAAATTCCCTACTGCGACGGGACGTTCAATCTAACCGGTCAGTTCTTTCAATGCTCTAAAAACTGCAGGTCAACCGTTAGTTTATGTTCATGTCCGTAAGCCATGGTATCTTTTTTATTCTCCAGGAGCAACAGGCTCAACTTAAGAAAAAACACGTGGTCATAGAGCGTTTGCAGCTCATTTTCCGTCAAAAACGTTTTGAGATTTACAAATACGATTGTCTTTCTGCAGCCAGCGTCAAGAGCAAATGAAAGGAAATTCAGCAGATTATCAAGGAACGATTTATCTTCTTGAGGCGCTGCACCAAATCCTAAAAACTTGAGGTAGCGCTTCATATCCCATTCTAAACCAAACCCCAAATCGGCATTAAAGCCAAGGTTCAATCCGCCCAAACGCAGCCTTATTGCTCGTTCAGCCTCTTCCACTTGCATGCGCAGGTCTTCGTCTTCTAGAAACTCACGCTCAACCTTCTTGGTGATTGCGGTCATAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATTACCAGTTAAATCGACACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //