Array 1 64002-65006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWNU010000010.1 Ralstonia pseudosolanacearum strain LMG 9673 IPO4102-NAK_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64002 29 100.0 32 ............................. GCAGTCCTGTTCACCATCGACTGCACGGCAGG 64063 29 100.0 32 ............................. CGGGCAAACCCGTGTTCCCGATGTTCCGCAAG 64124 29 100.0 32 ............................. ACGCCAGCGGCCGCCCGGTTTTCGTGCCGGGC 64185 29 100.0 32 ............................. CGCATTCCGGAGAAATATCTGGACGACGTTAC 64246 29 100.0 32 ............................. CCGGTCACGATCGACCATCCCATGGACAGTGT 64307 29 100.0 32 ............................. TTAAAGGTGGTGATCCAACGGAAGATGCGCGA 64368 29 100.0 32 ............................. AACGCCATCACCTCCGCAGCGCAGGGCGTGGT 64429 29 100.0 32 ............................. TTTGAGCCGGTAGAGATGACGTACACGAAATG 64490 29 100.0 32 ............................. GGCATCGAGGCCGGCGATCCGGTGGGCGTGAC 64551 29 100.0 32 ............................. GATTCCTCCGACATGACCGGCACACGCCGCGC 64612 29 100.0 32 ............................. GCGGGATGTTCACGGCCAGCGTCTTCTTCACG 64673 29 100.0 32 ............................. ACTTCCGGCCGTTCGCGCCACGGCCCTTCGGC 64734 29 100.0 32 ............................. GAACTCAAGGAATACCGGGTTGCGGTGGAGGC 64795 29 100.0 32 ............................. AATGGTTGATTCCGCGGAACAAGAATGCTTTA 64856 29 100.0 32 ............................. GCTTTCTCCAGGGCGTAGTCGCCCACCAGTGC 64917 29 100.0 32 ............................. TCGCCGGCGTTCATTACACAGCACGTCACGCT 64978 29 93.1 0 ..............C..........C... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCTATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCCTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGATGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACTGATATCCACGGGCTGGTGGAGGAGGAGATCGACGGAAAGATGGGGTACTTTGTCGACTGCGTGCGGTAGGGTGTTGTCGCGAGCTTTTGTCCGGCGGTAGATCGGTAGATTTTTGTGTGCTGATTTTCCGCTTTTGGATCAAGGGGTTGCGTTAAGT # Right flank : GAGCGGCAACGATCACACCGGTGCGACGTTCGCGAGTTCCCCGCGCATGTGGGGATAGGCTACCAACCAGCCACAGTTCCCGGGCTGCCTGCAGGGGAACAAAGAAAGTCCGCGGATTAATCCCTTTCCGGTCTCTCGATTGGGTAATCCTCATATTTTCTGAGGCCACCAAAGAAAACCAAAATAAATACCCACGAGACTGCTACGATCCCCAGCTCGGAAGCCCGTACAGATAGTCCAATTTCCTGGCATCAAAAACATGCATCAGGCTGACATGGGAAAAGGGGAACCACGATACTTTGCGTATTGGGGGAAGGCACGCATGCAGGAAGGTGCCAGCCAGCGATATCACCTGCTGGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTTCTCTTGCATCGCTGGCTGCAGAACTCGGCTGGCCGTTGCCGGTCGTCAACAAGATATTCGCGTGGTTCCTGGCGCTGCACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74445-76846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWNU010000010.1 Ralstonia pseudosolanacearum strain LMG 9673 IPO4102-NAK_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74445 29 100.0 32 ............................. ATACCTAAATGTGATCTATCCGTCGTCGCGCA 74506 29 100.0 32 ............................. TGTACGGCAACGCTTGGGTGTACGACAGCGGG 74567 29 100.0 32 ............................. GCAACCTGTCGGCGACCGCCCTCGCCGCGCTA 74628 29 100.0 32 ............................. TCCCCGCAGCTTGACCGCATGAGTGAAGAGGG 74689 29 100.0 32 ............................. CCATCGCCAGAGCGGCAGCCGTAGCCGTAGCC 74750 29 100.0 32 ............................. GCAATGGTCCTGCGCGCCGGGATCGAGTTGCC 74811 29 100.0 32 ............................. CCGTTGGCGCCGTAGGCGATCGAGATGTTGGC 74872 29 100.0 32 ............................. AAGGCGAGCCCGAGCTGGCGGACGACGACTTC 74933 29 100.0 32 ............................. GCTGTAGCGTTCTCGCCGTCCATGCTCGCCAT 74994 29 100.0 32 ............................. GCTGACATCGATCCCTGGACCCTGCTGTCGCC 75055 29 100.0 32 ............................. TGCAGTCCACATATGCGATGGCTCAGGGGCAA 75116 29 100.0 32 ............................. GCGCTAGTTACCGAGCACGTGGGTAGCCGTGT 75177 29 100.0 32 ............................. ACATCATCACTGAGCAGCCGCGTTGATACGTT 75238 29 100.0 32 ............................. CTCGCACAAGATGCGGCCATCGACGCGAAGGC 75299 29 100.0 32 ............................. TCCGACCTCGGATGGACGTTTATCGAGGACTA 75360 29 100.0 32 ............................. GCCACCACGTCGATGGTGCGCTTGACCTCCGC 75421 29 100.0 32 ............................. CAAAAGCTGGCGTCGGACATTAACGTTTCGGT 75482 29 100.0 32 ............................. TCGGTTAAACGCCGAATATTCACATAGATCAT 75543 29 100.0 26 ............................. CCGGAGCCGGAGCCGAAGCCGGAGCC 75598 29 100.0 32 ............................. CCAACTGCAGTGTCTATATTCCATACGAAATC 75659 29 100.0 32 ............................. CGCATGGCTGAGGAAGAGGCAGCAGGCATCGC 75720 29 100.0 32 ............................. TGCTGGCGATGGTCGCGGCAGGCGCCAGCGCC 75781 29 100.0 32 ............................. GCCACGCTTCGTACGTTGGAGGAAATTTTGAC 75842 29 100.0 32 ............................. TGCTGTTCCCTGACAAACAGGTCGTCACTGCC 75903 29 100.0 32 ............................. AAATGGAGGCCAAAATCGGAACACCCTGCGCC 75964 29 100.0 32 ............................. CGCGATGTTCGTCTGTCGCTGCAATGCTTGAC 76025 29 100.0 32 ............................. TTCCCTACACCACGGGCCTTAATTACGCCAGC 76086 29 100.0 32 ............................. TCCGGCGCCACCTCGTAGGCCGGCTTGAACCC 76147 29 100.0 32 ............................. ATTTGGCGAACGCACGCCATCGGGCGCTTTGT 76208 29 100.0 32 ............................. GGGAGCGCTGCGCAGGCTGTTGAACAACTGCA 76269 29 100.0 32 ............................. GCTCCGCCTCTGGGGGCCTCGGGCGCGGGCGC 76330 29 100.0 32 ............................. GAATCGTGCATGAGCTCGCTCTTCGACAACGC 76391 29 100.0 32 ............................. CCGATCACGTGCAGGTCGAAACCCGCGTCCTG 76452 29 96.6 32 ............A................ CCTGGCACGCGCGGCGCTTGGCCGGCGCGCTC 76513 29 96.6 32 ............A................ GCGGCGCGGCGTTGCGTCACACTGTGGCGTTT 76574 29 96.6 32 ............A................ AAATGGATCGCCGCATCGACAGCCGCATCCAG 76635 29 96.6 32 ............A................ GGAATTTTGGTGCGAGGGAGGGGACTCGAACC 76696 29 96.6 32 ............A................ TTGGCGCCTACCCGCGCCATGACCTACCGACT 76757 29 96.6 32 ............A................ ATCGAGGCGTGTTTTGTTGCTTTCGTGCGCAC 76818 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.5 32 GTGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : CCGCATCATCCCCGCCATCGAGGAGGTGCTGGCTGCGGGTGGCATCTCGCCTCCGGAGGCACCCCCGGAATCCGTGCCTCCCGCCATTCCCAACGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACAGAAGATGTTCCCCCGCGCTTGCGTGGGCGACTCGCCATCTGGCTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGTAACGTCGTCATGGCCTGGGCCAGCCCGCATGAATCGGGCTATGAATTCCAGACACTGGGGGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACTATCGGTACTTTTTAGGCAGTGGAATTTTCGGTTCCTAATCAAGGGGTTGGGTTAAGT # Right flank : GAATTGATAACGACCAACGGCTGCGCTGACAAGCGTAGTTCTCTTGGGGAAATTATTCCAGTCTGCTAGAATATTTCCGACTATCAGGAATGTTTCCTGCAAGGCTGAATGGTTAGGAGGTTCTATGTTGACTGTGGGCAAAGCGGTTTCCGCGGCCGAAGTGGCGTTCATGGCCAACCTGAGCGACAAGGAAATCAACCGCATGGTCGATGAAGACGTGCTGCCATCTGCACTCGTGGTGCGCGACCATGGCCGGCGTTTCGCGCCGCTGGCAGCCCCTTTTGCGACGTTCTATTTCAGGTCGAGCGAGGAACTGACGCGCGCCGCGCGGGTCCGCGTCATCGCGACGCTGACCGAACGGCTGCTCGAGCGTCCGGACCGGGACGCGTTTCTGTTTCTCAGTACCCGTGTGACAAAGGCGAAGTTTGACTGGTCGGTATCGCATTCGGACGTCACGGTGTTTCTGGCCACATACGTGCGGGAAGCAGCGGAGCGCGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //