Array 1 568-120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDQZ010000148.1 Pseudomonas aeruginosa strain 341M0106 assembly_contig_148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 567 28 100.0 32 ............................ AGGGGCCGGCCTCGCAAGGCTGACGCGCTCTC 507 28 100.0 32 ............................ TTGTACGGCCACCTTCGGACACCAGCACCACG 447 28 100.0 32 ............................ TGTCTACCCAGCGTATTGGCCATTCCGTTGGC 387 28 100.0 32 ............................ TCGGCCCGTCCAGAACGTCACACGCTCGCCGT 327 28 100.0 32 ............................ TCCAGGTAATCAGCGTACCACTGCATCATGAC 267 28 100.0 32 ............................ ATTTCCACTTCTGCTGCGGCCTGGGCGGCGGT 207 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 147 28 92.9 0 .........................G.T | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATCAGTCATTACCTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGCTACCGCCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGACCACTACAGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : TGGTCTGAAGTAGCCACGTATTTCTGGCCGACTACAGACCTCGCTGTTTTTTGAAGCGATCCATCGATCAAAAAGCGCTCAGATCGTCGTCTTATGTAGGGTTTTTAGCCGCTACGCGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 95555-95047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDQZ010000019.1 Pseudomonas aeruginosa strain 341M0106 assembly_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95554 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 95494 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 95434 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 95374 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 95314 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 95254 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 95194 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 95134 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 95074 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTGCGGGTCTGCTTGCGCTTGCCGGCGTACTCGGCGTCGGCGAAGGTCATCTGCTTCATCGGAAAGCTCTGCGGGTGAAGTCGGCGGATTTTGCCAAATCAGGAAGTCTTTTTCAGAGTTTCCCTAAGAAATTGACCAGATCGCGGCGTGGGGTGGTCGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //