Array 1 371524-365748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETV010000002.1 Emticicia sp. BO119 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 371523 29 100.0 36 ............................. TTAATCTCAATCTCCTGTTGCCTTTCAGGACTTATT 371458 29 100.0 36 ............................. TTGAGCCGTAGTAGCCGCCGCCGTGGCAATAGCCTG 371393 29 100.0 37 ............................. GGTGTTTGATGTCCTTTGGTTGTGTGGGGTTGGGGGT 371327 29 100.0 36 ............................. TAACCCTACATCGGAAAAATTCTCGTATATTCATCA 371262 29 100.0 37 ............................. AATGGCACTCCTGAGATAAATAATAATATCGTTGACT 371196 29 100.0 35 ............................. TTCCAGCCCCCCGGCGCATTGTTCGCATAAAAACT 371132 29 100.0 37 ............................. ATATTACTATGTGTGTGAAGATTTGTTTTTTGCATGA 371066 29 100.0 36 ............................. GGTTTCTGGATTATACCGACACTTTGAAAGCCTATT 371001 29 100.0 37 ............................. GCTTGTCGGTGGTACCGTCGCAATCCTTTGGCATTTC 370935 29 100.0 36 ............................. GTAACTAAAAGTAATTTTGCACAATCATCATCATTT 370870 29 100.0 36 ............................. AATTGAAAGTATAATAGGCTTTCAAAGTGTCGGTAT 370805 29 100.0 36 ............................. CGTTTTCTACTCCCTTTAAAAAGATGATAACAAAGT 370740 29 100.0 36 ............................. ATTGCGCCACTCGGTAATTTTACTAAATCAGGCTGA 370675 29 100.0 37 ............................. CTTCCGGCACATAAAAATTATATGACATTCCGCACCT 370609 29 100.0 37 ............................. ACAGCAAGCCGCCGGAATGTCTACAAAACTGGTTGGT 370543 29 100.0 36 ............................. GGAGTAACTGTATTGATGCCTATTCGAGAACCATTG 370478 29 100.0 37 ............................. AGAAAAAGGCGAACAACCTTTAGTTATTTCAAAGGAA 370412 29 100.0 36 ............................. CTACAAGCGTATAAAAAACCTTGATATACATCAAAT 370347 29 100.0 36 ............................. TAATTGTTTTTTTGTTTCAATAATTGTTGTATATTT 370282 29 100.0 36 ............................. TTTCAAGATCTGATTGTCAAGAAATACGGTTTCGAC 370217 29 100.0 37 ............................. TAATTGATTACTTCTAAGTGATTTATTTCGATAAAAA 370151 29 100.0 37 ............................. AATTTTTGCAGGGGCTTTTATATCAATCCCTTTAACA 370085 29 100.0 39 ............................. AAGCTACCTTTAAAAATAGGTATGGACTACAATAGTGGT 370017 29 100.0 37 ............................. CAGACTTCTTATCATTTTTTAAACGGTCAATGTCAGC 369951 29 96.6 35 ........T.................... ATAATCAATAAAATTATCAGGAAAAATGACGGGCA 369887 29 100.0 37 ............................. TCCGTCGGGCCACCTGAATCAAACGAAGGTACTTCCG 369821 29 100.0 36 ............................. ATGTAATTCTGCCTGAGCTTCTGCCGATTTATCTTT 369756 29 100.0 34 ............................. ATCGCCTTTGCTTTGTAGTACAATCCTCTTAAAT 369693 29 100.0 36 ............................. GTTGTACTACCGAAAATCATATCGGTATTCAACCCA 369628 29 100.0 37 ............................. TCGTGCTGAAAGCGGTAAAAACCAGGGCAATGGCAAG 369562 29 100.0 37 ............................. GCCTGACAAATCTAAAGGTCTTGGATTTGCTTTAGCT 369496 29 100.0 37 ............................. TTTTCTATAAACTAATGGCTGAAAGAACTAAAAATAA 369430 29 100.0 36 ............................. GTCAAAACGGTATATATGTATGTGCTACAGGTGCAT 369365 29 100.0 36 ............................. TCCGGTACGAAGAACGGAACAAACCAGACATTCACG 369300 29 100.0 35 ............................. ACCTATGATTTAGATGTATCGGGTAGTATAGGTTA 369236 29 100.0 37 ............................. TCGATAAGAACGTGTCTATGTTCGACCTCTAAAGAGG 369170 29 100.0 36 ............................. ATTTTAGTGCCCTGTGAGAAATTGGTTGAAATATCT 369105 29 100.0 37 ............................. TCTATCTTTCTGATAAAAGGGCATTCATCTGCTAAAA 369039 29 100.0 35 ............................. TTGCCCGTTAGTTTATAGTGTATTGAATAGAGTGT 368975 29 100.0 37 ............................. CCCTCTTTAATAAACTTTACCGCGCTATCCCATTGAG 368909 29 100.0 36 ............................. ATTCCCTGTAAATCAGCATATTTTTCGCCGATTGAT 368844 29 100.0 35 ............................. GTTTTCGTCCTTTGGCTTTCTTCTGGCTATATGCA 368780 29 100.0 37 ............................. CAAAAAATTGCTGATGCAGTCAGAGCAAGGCGTGAGG 368714 29 100.0 37 ............................. TTCGCTTCGTGTAAGTGTTGCTTTTGCAATAGCCTCA 368648 29 100.0 36 ............................. ATTGATTTGATTTTAGTTTTAGTAACTAATACAAAA 368583 29 100.0 36 ............................. TAAATTATTTTTTATGACACCCTTGGATGCACTCAA 368518 29 100.0 35 ............................. GTCTAAAGAGATATTGCAACGTGTGGCCCTATTTG 368454 29 100.0 36 ............................. TATGTGGCGTACTGACTGTATTGTTGGGAAACTGCA 368389 29 100.0 36 ............................. TCTGCTTTACATCAGTTTGAACTTTTAAAAAGTAGG 368324 29 100.0 36 ............................. CATAGTCTGATTCATCGCTATATACAACTCGGAATA 368259 29 100.0 35 ............................. AGTGGATTGTTCATTCATTCCACATTCACACCGTA 368195 29 100.0 35 ............................. TTTCAAGATCTGATTGTCAAGAAATACGGTTTCGA 368131 29 100.0 36 ............................. CACAATGACCACACAACACTATGAGAACTTATTTAA 368066 29 100.0 37 ............................. ACTCTGCTGTATGAAACTGTTAACCAGACCTATGGAT 368000 29 100.0 36 ............................. TTCTCAAGCCTCTCACAAATAGAGTCAAATGTCTTA 367935 29 100.0 36 ............................. ATCCTGAGCAGATTTACAGAAAGGATGAATTTGAGG 367870 29 100.0 37 ............................. AATGTAGCGCAGGGGTATTATAAACTTTCTATTAGTA 367804 29 100.0 36 ............................. ACGCCTGACCCCAACGCCGCCACAAAAGCACAGTTT 367739 29 100.0 37 ............................. GTAAACATCACTGCCTCGCAAATAGCTTGAACCTCCT 367673 29 100.0 37 ............................. GTAAAAAGATATGACAATTGAACAAGCGAATGAACTA 367607 29 100.0 36 ............................. TCTCTCTCGTCCTGCTCAGAACGAAATCCGTAGTAA 367542 29 100.0 37 ............................. GCTGTCATTGCGGTTGTTGGAATAATTTCCAATCCGC 367476 29 100.0 36 ............................. AATTTACCCGTACTTAAAGTGTGATGATAATGGTTT 367411 29 100.0 37 ............................. GCCTATCCAAATCAGGTGATGCCAGCCCGATCAACGA 367345 29 100.0 37 ............................. GCATTAATCATTGACAATCCTTTGACACGAACATAAA 367279 29 100.0 36 ............................. CTACAGGTATATATCTGCGTTATGTCAGAGCTGTAT 367214 29 100.0 37 ............................. TTCTGAATAGCAGCTGTGCCCGACTTAATTATATTAT 367148 29 100.0 36 ............................. GTTATTTATCCCTATTTGTCCACCGCTGTTCAATAG 367083 29 100.0 36 ............................. TTGTCCACTTCCTGCAGCTATATCAGAACGAAAGGC 367018 29 100.0 37 ............................. AATTGGGTGAAAAAGAAAATGACTATACAGGGCCTTC 366952 29 100.0 36 ............................. ATTATCTTGACTTGAAAGTGGCGGCAGAACAAAAGG 366887 29 100.0 37 ............................. TACAAGTATAGTCTTGTTATCAAGGATACGCCGCAAA 366821 29 100.0 36 ............................. TACTTGTCAAAATAGGGATAGAGCTCATCACCTTCC 366756 29 100.0 37 ............................. AATCATATTCAGGTTCAAACACAGATTTTATAATAGA 366690 29 100.0 36 ............................. TTGTCACATCTTCAGGAATGAAAGATGAATTAGTAT 366625 29 100.0 35 ............................. TGATTTGTGCCTACACCGCTGATATTAATCACTCT 366561 29 100.0 36 ............................. AGACTATTCACGTAGATGAACCGCCGAACTGTTTTC 366496 29 100.0 36 ............................. TCCGATATGGGTAGAGATGAATGAGAACGATCCGGT 366431 29 100.0 37 ............................. ATTAGATAGACAGGGCAAATTGAAACGTGAGTAGATG 366365 29 100.0 37 ............................. TTCTTTGATCCGGCACTACGGAAGTGGGAGAAAGCTA 366299 29 100.0 36 ............................. ATATCTTCGCTTTTCTTTTCCTCCCAGGCTTTTTTT 366234 29 100.0 37 ............................. TTGATTTTCCTGATGCTGACATAGTTGATGATCAGGA 366168 29 100.0 37 ............................. CTTATGATACAGGCCGAGAGTCTGCATCGTGAAGTGG 366102 29 100.0 36 ............................. TTGCCTTACGAACATTATCAGCTTCAATCAATGTAC 366037 29 100.0 35 ............................. CTACCATTCGGATTGAGAGCAGTTCCGGCATCTAT 365973 29 100.0 37 ............................. TTTAGTACCGGAAATGCATTAGCCATAGCCAAGCACA 365907 29 100.0 36 ............................. ACGGTTTGCATCATCAGGATGATTGTTGCCGCGACT 365842 29 96.6 37 ..................A.......... TTTACGTTGCCTAACCATACGCATGGTGAAGAGCTTG 365776 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 89 29 99.9 36 CCTCTAATCGTACCTTATGGAATTGAAAC # Left flank : TTTTTTTATTGATTGACATAGATTTTTAAAAATAATGTATGTAATTTTAGTTTATGATATGGGTGAAAAGCGCGTTGGTAAGATGCTGAAACATTGCAGAAAGTATCTCAACTGGATACAGAACTCGGTCTTTGAAGGAGAAATTACGGAGGTAAAGTTAAAAGAATTACTGGCCGGAGCCAGAAAAATAATGGATGAGGCGGCCGATAGCATTATTCTCTTTAAAAGCCGTGATGAAAGGTGGTTAGACAAGGAGATTATCGGAATTGAACGGATGACAACCGATAATTTTTTATAGGAGGGTGTCGTCGGTAGTAAAAAAACAATACAAATTCTGCTCTTTGACATCTTGTAATTTAAGATGGGGTAATGTAAATGATTGATAATGAGTGGTCGTCGGACACGGGGTAAAAACATACAACCGAAGTCCGACGACTTTTATGATTGTTTTATGTCAAAAAATCGTTTTATTTGTATCTGAAAGGCCGTTTTTTTGACGG # Right flank : ATTATCAGTAGACGCCTCGTTCATTTCTCAAATTTCCCTCTAATCGTACCTATATTATTCTGTTTTTTATACACTTTGTGAGCATTCCATATACATTTTAAAACTTAAAAAATATTTACGTGTATATTTTAAAAAAAGTCTGATTACAGGTAACTTTGCCCTGAAAACAAAATTGTTTGATGCTAAGGAAGTTCAAATTTGTTGTACCGATGTTGTACCGATAATTTTAAAAAACAACAAAGTGCATCAGAAATGACGAATTTTGGTGAAAATTAGAAAAGTGAATTAAATTACCTAATTTTACACCAAAAATTAGCTTTTATTCTAAGTCAAAATACATGAGAGAGATCCAATTTAGAGAAGCCCTGCGTGAAGCCCTTTCAGAAGAGATGAGACGTGATGAAAACGTTTTTCTGATGGGTGAAGAAGTAGCCGAATACAACGGTGCCTATAAAGTAAGCCAAGGAATGCTTGATGAGTTTGGCCCTAAGCGTGTCATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCTAATCGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 491339-492791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETV010000002.1 Emticicia sp. BO119 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 491339 37 100.0 38 ..................................... GGCGTGGATGGTTCTAACAATAAGTGCATTAAGGTTAG 491414 37 100.0 37 ..................................... TTATTATACAGTAAACATGGGGCCAGTTGTAGCTCCT 491488 37 100.0 36 ..................................... AGCGTCATTAAAAGGAATGGCGTTCAAAATACTATT 491561 37 100.0 38 ..................................... GCTACTGACAAACAACTAAAAATCATACGTGTAGCCAT 491636 37 100.0 37 ..................................... CTTGTATACCTGATGTTTTGCCGTCGTTTTCGAGTAC 491710 37 100.0 36 ..................................... ATAATCGACCTGGAATACTGTTTTGGCGTGATGTGG 491783 37 100.0 37 ..................................... CCATTATGAGATTGAATAGATGTAATAGGTAGTTTGC 491857 37 97.3 36 ..........C.......................... TTTTTAATTGATAATACCGATCCCCCTTTTTGGCAT 491930 37 100.0 38 ..................................... GTGCTAAATACTTTATTGAACTCATCTGAGGCATCGGA 492005 37 97.3 37 .........A........................... ATAACCTGAAGAGCTGCTGTTATATTCACATCATCAT 492079 37 100.0 37 ..................................... GCAATAGGCGGCAATACTTCCAACAAAAACAGCGTAT 492153 37 97.3 47 ..............C...................... CAATATTGCCATCAACATTTTGCCCCCAAAGCACCTTTGGCGGTTGT 492237 37 100.0 37 ..................................... ATTCTTCTATATGCTTGTCATCAAATAAGGCAATAAA 492311 37 94.6 36 .....G............T.................. AACGCTTTTAAAATGGAATATTCGAATGAGATAAAG 492384 37 89.2 38 .....G..A..A........................C TCAGTCAATTCGATTATGTATCTTAAGCCTCTCATTTT 492459 37 89.2 37 .....G.....T.............G..........C CCAGTAGTCGGATAGAAATAGAAGCCTTGTGCAGCTT 492533 37 83.8 39 T....G..A..T......T.................C ACCAATTATCTCAAGTATCTGCCATTTGGTGACTACAGA 492609 37 89.2 37 ...G.G.....A........................C TATTCCTCACCAGTTTCAGTTATTCTACAATTATTAA 492683 37 86.5 35 .....GA....T...............A........C AAATAAGTAGTTACTAGAAGAGAACAGTAAATCCG 492755 37 70.3 0 T.......AA.TT..GG.A........AT.....T.. | ========== ====== ====== ====== ===================================== =============================================== ================== 20 37 94.7 38 CATTAAGAGGTCCTTCCACTAAAATAAGGATTGAAAT # Left flank : ACATAGTAATAGAGTCTCAAGACATTGTCTTGAGACTTTCTATTGTAATTAGGCTCCTGTAATTGATAGTCAATTAATTTAAAATTTAGTTTTTGCATCATTGATTAATAACTACTAAGTAGTGCCAAAGCAAGTATGAGATAAAATATTGTAAAAGTACTATTTCTTTAAAATGAAACTTATAGCCCTACTTATTCTTAAATACTTATATTGTCCAAGTAGAGCACTATCAGGTGATTTAGAAGTGAAAAAACATATCCAGCAATTAGAACCAATAAAGATTATAGCGATAGATGGTTTATGTAGAGGATTCCACCTATTAATTTATTTTTTATTCTGCAATAAGGTTATATATATAGCTGATAATTAAATAGTTATGTTTACGGAAAAATATCAGAAAATACTTAATAACAGTTCTTTAGCACGGGGTAAAATAAAGAATATTAAAAGCAAAATCCGGATTAGTTTGGTGATAATCAAGTTATTATATCTATAGACGA # Right flank : TTCAATTAAGCTTAACATGCTATTTTAGGTATTGAGTGCATGATAGTCACGCTTTTCACGAAGTTAATAGTATGTACAGTGAAAACTATCACATTCCTTCACTGATTTAAAAATGCTCTCCGAATCTCTTTGCATTTTTGAAGCAGTTGCTTGAGTGGCTCAAAACTGGCGTTGTTAATTTTGCCTAATCTTCCTTTCTTTGCATTATCAAGTGAAAACTTGATGGTATATGGACAGTAGAAAGCCACTTACTAGGTGGCTTTTCTCTCTTATCATTGCTCAGTAGGAGTAACTGTGATTTTTTTCAGAAACACTTCCAATAGCATAAGTATTGCAACTGACCTTTATTAGCATATTCTTATAAAATGTTATCTTTTTGAAAATCATTTTACAATTACTTTAAATCAATTCATTGATAAATTGTCAGAACATCTGATAAAACTTTCATAATTTTAATAAGTTTTAATACTAAAATTGATTGTAGGTAGTTAGAATAGTGT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTAAGAGGTCCTTCCACTAAAATAAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 280250-287598 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETV010000001.1 Emticicia sp. BO119 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 280250 36 100.0 34 .................................... GATTAATTGGTCTACCTTTTTCACCTGTGCTTTC 280320 36 100.0 36 .................................... ATAATTTAATAATGCCATAAGATTAGAAAAATTGTT 280392 36 100.0 36 .................................... TCTCTTCTATCGCCTTAGTCTGGAACTCTCTCCATT 280464 36 100.0 34 .................................... ATAACGAGCGGTTGGATTACCGGAGCAACTACAG 280534 36 100.0 36 .................................... TACTTGTCCTGTGTTATGTGTGATTTTTCTGTACTT 280606 36 100.0 35 .................................... GTTCATTGAAGTTATGTGTATCAGATGTCTTAGCG 280677 36 100.0 32 .................................... AGTTCACGTTCTGTCTCGTTACTTCTGATAAT 280745 36 100.0 34 .................................... TCTCGACTATACTCGTACAGAGTAATGGTGCGAC 280815 36 100.0 36 .................................... GCTTACAATCTTAGGGACGTCCTCCCCCTTATCAAA 280887 36 100.0 33 .................................... ATTAAGTAAATCTTCAACAGTCATTTGAAGTAT 280956 36 100.0 34 .................................... ACTTCTTCACGCCCTGTTGCTTTAGGAACGTGGT 281026 36 100.0 36 .................................... ACTAAGAGTAGTGTAACAATCCAGAGGATTGTTCTC 281098 36 100.0 34 .................................... ACTTCTTCACGCCCTGTTGCTTTAGGAACGTGGT 281168 36 100.0 34 .................................... AGTGGGGCGGTACAAATCGTCCGCGATTTGTCCG 281238 36 100.0 36 .................................... ACCAGTTGTTCCGTCCTGAAGTCGCGTTGTAGTTAG 281310 36 100.0 33 .................................... TACTGTTTGAGAGAACTGGCGAGATTTTTCTGT 281379 36 100.0 36 .................................... TGTTCTCGCTCGTATACACCGTGTACACGGTGATAG 281451 36 100.0 35 .................................... AATTCTTATTGTAAGAAATACTTACAATACCTATG 281522 36 100.0 38 .................................... TCTACAATTTCGTTTTCTTGATGTACATTTTCCTCAAT 281596 35 97.2 36 ........................-........... TCTTCATCATCCTGGATGTTCACATGTAACTTTTCT 281667 36 100.0 35 .................................... TTTTTCATCAGGCTCAAACCCGCCCAAAAACCCTT 281738 36 100.0 34 .................................... ACTGAACACCTACGGCTTCAATTGATTCAGCCAA 281808 36 100.0 34 .................................... AACAACATACTTAACCAGGGATTTGAAAATAGTT 281878 36 100.0 34 .................................... ACAAAAATACCGACTTCAAATCAGCGTACTGATT 281948 36 100.0 35 .................................... TAAAAGTGCCGCCTGAACGCAGGCGATGATTTGAA 282019 36 100.0 34 .................................... AGTACGTTCTTTTGTAGTGAAATGAAAATAACAA 282089 36 100.0 31 .................................... TTAAATAATCTGTTTCTCAGAAGCTCTTTGT 282156 36 100.0 35 .................................... ACTCGTCCTCTTCGTTCTGATAGCTCTTAGGCGTA 282227 36 100.0 35 .................................... ATCTTCGTCGGAAATGTAGGTCTCCGACACTACGT 282298 36 100.0 36 .................................... TCTTCATCATCCTGGATGTTCACATGTAACTTTTCT 282370 36 100.0 33 .................................... CTCTATATCTGAAGTCTTATAGATCTCTACGAC 282439 36 100.0 37 .................................... GAATTCAGAACGAACGAATCCGAGAATAACGTCCGCA 282512 36 100.0 36 .................................... ATATACTCAAAAATATCTTCTTCTACTGGTGTCCAT 282584 36 100.0 40 .................................... TCTGTGTTGCATATATGGCGTCTTGCCAGTGATTGTTACT 282660 36 100.0 35 .................................... GTCTTGTATTCGGCCAATATATGCTGATGTAACTC 282731 36 100.0 36 .................................... AATCTACAATGACGTCTTTGTTTTCGGTTGTATTGA 282803 36 100.0 35 .................................... GTTGGGGTGATCTTATTTTCGCCTCCAAGCGCTGT 282874 36 100.0 35 .................................... CATAGTTTTGGGGCTTGATTCGACAGTTTTTCTTC 282945 36 100.0 36 .................................... TTTTAGTTAAATTACTGGTTGCTCGTAAACCTGACT 283017 36 100.0 34 .................................... ACCCGGATTAATGGTGACAGATTGAGCAAGTGAT 283087 36 100.0 34 .................................... CGCTCGGTGAGGAAACTATGCTATCGTGTGCAAT 283157 36 100.0 35 .................................... AATGTTTACAAATTGCCATCATTACTAATGGTACT 283228 36 100.0 35 .................................... TGAGGAAGTCAGTTATGGCTGGCAAGAGCCAGGAA 283299 36 100.0 35 .................................... ATCTTAGGCACACCCTCACCCTTATCAAAAGAGCG 283370 36 100.0 36 .................................... TCCCTCGGTGAATACTCGGATAGCTGTGAACACACG 283442 36 100.0 37 .................................... AGTGAACACACGCTTAGCGTCGGTTACACCTAACAGC 283515 36 100.0 30 .................................... ACTCCGGCACTTGTTTGTTTTAATATTTCT 283581 36 100.0 36 .................................... ACTAAGTTTTTGGCTGTTTTCACGTCTTTTTGCGTT 283653 36 100.0 36 .................................... AGTCAGATAACTGAATACCATGCGTAGCCGTCGCTT 283725 36 100.0 35 .................................... ACTTGTTACTTTTATACTTAAATCTTCCATTTTCT 283796 36 100.0 35 .................................... GTTCCTGACCTGGTTGGCTTCGGATCTACTACCGG 283867 36 100.0 34 .................................... TTTGCTTCAAAATTTTCGTATGTTTTATCAAACT 283937 36 100.0 32 .................................... ATTTCCGTATATGTTATTGCCGTCGCCGTATG 284005 36 100.0 34 .................................... TATTCGGGGATATAGCTGGCCACTACCATAGTAA 284075 36 97.2 37 ......T............................. TTTGGTAAATAAGCTCTGCAATAGACTGGGCTGCAGT 284148 36 100.0 37 .................................... AGTATTAGCCAAGCCTCCTCCGAAGACATGTCTTTGG 284221 36 100.0 33 .................................... TAAATAGTCTTCTTGGAGTTGTTCCAAATTCCT 284290 36 100.0 35 .................................... CTTATGCCCGGCTTGCATCGCCATTCGGTGATAGA 284361 36 100.0 35 .................................... TTCCTCTCCCTCCTCTTCACTCGTCTCAACATCAT 284432 36 100.0 35 .................................... AAGCTGCCATCGACGTAAAAACCAAATTGATTGGT 284503 36 100.0 35 .................................... ATCCTCCAGAGCCACCATTTCATTCACTCAACTAC 284574 36 100.0 36 .................................... AGAATTAATCCCAATCCTAATAGAGACAATAGGACT 284646 36 100.0 33 .................................... ACCTAGTGTTGCTGTAATCGTAAAGGAAAAACC 284715 36 100.0 36 .................................... AGTACCCTCCACCAACCCGACAACTGTTGAAAAAAT 284787 36 100.0 34 .................................... CTTTCTGGTTTCACATAAGCGTCTTGCCAATGAT 284857 36 100.0 35 .................................... ACTCAACTGTAGGGCGTAATGTAAAAATAGAGCAA 284928 36 100.0 35 .................................... ATAACTTGCAGTTGCTCTGAAATTAATGTTGTCAT 284999 36 100.0 41 .................................... ATTAAACCCTTTCGGTGCAGGCGGCATGCCCAGGAAATAAT 285076 36 100.0 35 .................................... CTTGCAAAATGAATTCTCCGTGCAGTTCTTTTTCA 285147 36 100.0 35 .................................... ATCCTCCAGAGCCACCATTTCATTCACTCAACTAC 285218 36 100.0 34 .................................... TGAATAATATCTGGAACAATAGGTTCTTCATAAG 285288 36 100.0 35 .................................... ATCCTCCAGAGCCACCATTTCATTCACTCAACTAC 285359 36 100.0 34 .................................... TGAATAATATCTGGAACAATAGGTTCTTCATAAG 285429 36 100.0 35 .................................... TTCCGCATAGATAGCCATGTGATGCTGTGATCGTA 285500 36 100.0 35 .................................... TGTCATTTTTATATTCCCTATCTGCTACGATATGG 285571 36 100.0 36 .................................... TTTTCGTGATGGTAAGTTCCAATCAGGTTTGGTATG 285643 36 100.0 34 .................................... CGTTAGCTATGCCAGAGTCAGGTTGAGTAGGAGT 285713 36 100.0 36 .................................... ATTCTTCCTTGTTTATACCTATAGCGTCCATTTCCT 285785 36 100.0 33 .................................... GCTTCCTTTTTAGATGGTGTTGCTATATATAAA 285854 36 100.0 36 .................................... ACCTTGAAGACTTTATCGTCTTTCTTTCCTAAGTAG 285926 36 100.0 33 .................................... CTCTTAGAGAATCTGCTTTTTTTATAAAGCAAC 285995 36 100.0 34 .................................... ACCATTAGGCAATCTTATCAATTTGCCTTTCGCT 286065 36 100.0 38 .................................... CCAAAATAACTTAAATACTGAAAATAAAACATTTCACA 286139 36 100.0 39 .................................... AAAAAAGTCTAAGTGGCCCAGCTTTTTTACCCCTTATGG 286214 36 100.0 33 .................................... ATTCTCTTCTGCTATTAGTATTTCGCTACCAAT 286283 36 100.0 35 .................................... TCCAATTTCTTTCCAGGCATAAATTCGCTCGGTGA 286354 36 100.0 34 .................................... AGTCATCGTCATCACGCTCAGTGCTACGCTCCCC 286424 36 97.2 39 .........................T.......... GCTTCACTATCTTCACGGCCTTCTTCGTATTGTCATAAG 286499 36 100.0 38 .................................... ATCTTGTCGATTACTCGCATAAGCTTACGGGGTTAAGA 286573 36 100.0 35 .................................... GTTTCTTTCGAATGCCTCGTCGATATGTGACTGCA 286644 36 100.0 36 .................................... TTTCTCCAACGAACACAATCTCGGAACCCTCTTTCG 286716 36 100.0 35 .................................... ATATCTTCAGGCTTTGCAACCCACGCAGCAGCGCC 286787 36 100.0 34 .................................... ACATCTGCAACTTCATTAAGCTTTTTCTGACGGC 286857 36 100.0 36 .................................... CATATTTCTTCGCCTGGGCGAGCGAAAGTATAAAAA 286929 36 100.0 35 .................................... TGCTAACTGCTCCAGATCAATCATCTTAGTACGGC 287000 36 97.2 34 A................................... TGGTACAGTGCCTCCAATACTTGGCTCGGGAATT 287070 36 100.0 36 .................................... GCTGTATAAGGATTTTTGATACTATCCTTAGCAAAG 287142 36 100.0 34 .................................... AGAAAAAAGAAATACAGGCAGAAGAAAAGCAATC 287212 36 100.0 36 .................................... TTGGACGAAGTTTGAGAAGTCTGACTCATTTTATTT 287284 36 100.0 35 .................................... TTCCACACCTAAGAAATACTTAAATTCCTCATTTA 287355 36 100.0 33 .................................... CCACCGTCCGCCGCATCGGCGTCTTCGCACAGC 287424 36 97.2 32 ........................A........... TTCCTCAATACATTTAAAAGCTTTTCTTGCTC 287492 36 100.0 35 .................................... CTTCCATTTTACTTACTAATTGTTCAGCTCTTTCT 287563 36 88.9 0 ...............................TTT.T | ========== ====== ====== ====== ==================================== ========================================= ================== 104 36 99.8 35 GTAGAAATGAAGACCTTTTCAAGATAGGATTACGAC # Left flank : CCGAGAAAACAATCTTCAGAAACAAAACACTCAGTAGAAATGCACAGATTTATAGAATAGCAGGTGATTTTTTGGAAATATTAAATAACTTTACAGAGTAATACAGCAAATGTACCTGGCGTTTTATGATATTGAAATAGATAGAATCAGAACACGGGTAGCCGATAAACTGCTCAGAGCAGGACTTGAGCGGATACAATATTCTGTATTTTTTGGCCCCCTGACCGATACTCAAAAAAAGAAATTGCTGACCGACATCGAAAAAATAGTAGGAGATTTATCTAAAAGTAATTTTTTATTGATACCCCTCAGCCCCACAAACATTGAAAACGCTTACCATTGTGGAGAGACACCCCCAGATTGGGAGTATCTTTTAGGGAAGCAGCTAACACTTATTATCTGATTGCTTATTTTAGACCAAATGCATCAATTGCCTGATTCTAAAAACAAACAAATAAGTAGTATTTTATTGATTATCAGTACATTAGAACCCATTAAGG # Right flank : TTATTAGTAGAATTATTTATTATCTAAATTACTTAATGCTTTTGACTATGATAATGATTTGCTTTTCAACCGAACAAAATACCACTAATCTTATTCCTGCAATTCAAATTGCCGAAGTTAAGGAAGTAGTAATTATAGAATCTGCTATTGCTGAAAATAAGAAATGGGCTGATGGCATGATAAGAGTCTTGCAGAAAAGAGGCAAGAAAACAGATAAAATCAATTTAAAAGTTGGCGATGGGAAAGGTGGCGAAGATACCCAGATACTCTCCGTATTAGAGAAAATAAACGTATATATTCAAACCAAAACCAAACCTCATGATACCATCTATTGGAACACAGGCGGAGGGCTCAAACCCCTGATACTTGCCATGTATCAGGCTTATTTACAAAGAAATAACCCTGAAGATAAAATCTGCTATAGTAATCCGTTTAATGCAAAGCCAAGCATAGACTTCTTCCAGAATGTCAATGGCATTCAAAACAGTAGCAGTATAAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAGACCTTTTCAAGATAGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //