Array 1 775062-774639 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIV01000001.1 Clostridium botulinum strain 1141-11 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 775061 30 100.0 34 .............................. GTGATTAAAAAAGAATCTCCGTACACAGTTTGGA 774997 30 100.0 35 .............................. AAATCAATACCACACTCATTGCAACTATAGTGCAT 774932 30 100.0 35 .............................. GAGCTATAAAAGTATGTTTTGTTTTATGTAAATCC 774867 30 100.0 37 .............................. TAGAATAGGCTTTAGGCATGGCGAAGAATTTGCAGAG 774800 30 100.0 36 .............................. GGATTTAATGAAAGTAAAGAAAATCGTATAGGTATA 774734 30 100.0 36 .............................. AAACCATCACTTAAATCATGTCTTCGCTTTTCTATT 774668 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATGAAAATAACAAATAATTATATAGAATACGCTAATATTTTTTCAACCAACTTTAGCTTACAAACCTATCTTAGCTCTTGAAATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAGCCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATTACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTCCTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGAATTGTGATAATTTCTATGCAAATTATTAAATTAATTTTAAAAACCTGTCTATTTTTAGGACAGGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 776459-775973 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIV01000001.1 Clostridium botulinum strain 1141-11 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 776458 30 100.0 35 .............................. GAGTTTTTTACATCTTTTCCAAATACAGCTACTTT 776393 30 100.0 35 .............................. AAAACTTTGTATAGATCTTTAGTTTTGTTTGTACT 776328 30 100.0 35 .............................. ATTAATTTTGTAAAAAAGTAGCTATGCCAACATAT 776263 30 100.0 37 .............................. GATGTTAGAAATTGATTTAGAAAAGGAAGAAAATCAG 776196 30 100.0 37 .............................. TTTACTTTTTTGTTTACATAAAGATATCTAAAAAAAG 776129 30 100.0 34 .............................. TCAACACTATTTTTTCTTTCTATAGCTATGTCAT 776065 30 100.0 33 .............................. TAGATTATGATCCAGCACCAATACTTTTATTAG 776002 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 35 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCATGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGCCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATAGTTAATTCTAGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 429909-429687 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIIV01000006.1 Clostridium botulinum strain 1141-11 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 429908 29 100.0 36 ............................. TACCAATAGAATCTTTAACTTTATTTTCCATATATG 429843 29 100.0 35 ............................. GTTTTTTTCAGTTCATCTGCATACTTCCTTACACA 429779 29 96.6 35 ....A........................ AATTGTTCTATTTTATAATTAAATTTATCTATTAA 429715 29 89.7 0 ....A.G.......A.............. | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 96.6 36 TTGAGCATTAACATGAGATGTATTTAAAT # Left flank : ACCTAATGTTTCATAAAGAAATAGATTATGAAAATATTAAAGAGGAAGAATTAGATGAAATTTTAGAGGGGATAAAAAAAGAATTTCATGATCTAATAATATCAGTAAAGGAAGAAAATAAAAACATAATATTAGTTACTAATGAAGTAGGTTATAGCATTGTTCCGGCCTATAAATTAGGTAGGATATTTAGAGATTTTCAAGGTATTATAAACAAATTTATAGCTTCTTTGAGTGATGAGGTCTATTTAGTAACCTGTGGAATACCTTTAAAAATAAAATAAATTTTAATAACTAATTAATCTAATTATAAGTAAAAGAATTTTCCAACCGCATTTAATTTTAAAATCTATTCTAGGCATTGAAATATAAGACTTATGATAAGTTTTATCTCTACCTTTATAAAAAATGGCAAACGGTTGGAAAGGTTTCTTTGAAACCTTGTAAAATTAAAGGTTATATGCTATTCTTAGAATTAAGAAATGGCTATTTTGCTATGG # Right flank : CAGCATGTAGAATAAGGTGATTCAAAATAAATTAAATCTATTTTGAATCACCTTATTTTTGTATAATAAATACTAGCTATTTTAGATAATATTTAAAATAGCATATAATTATTATTTTATATTGTCACAATAAACATTAATAGCTTCCCTTAAAAATTTAGAAAGACCAGTTTTATATTTATCTATATTAGCAGTAAATCTTTCATCATTAATATAAAGTTCTCCAAGCCCCCTAAATATTTCAGGAGTACAATCATAAAAGTTTTTTGAAATGTGCTCTCTAAATTGGTGAACAGATTCTTGGACTTCCTTATCATCTGGATTTTTGTCCATAAGATTTGCTAGTTTTTTATAAATTTCATCCCAACCTTTCATTATATTACTCCAGTCTTCCTTTGTATATTTGGATGTTTTTTTATTACTTTCCTTATAGGCAGAGGTATTACCGTATTTTTCTTTTATCTCTTCTGAATATTTTCTTTGATGCTCCTCTATTTCAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAGCATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //