Array 1 54037-54326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082942.1 Clostridium sporogenes strain FDAARGOS_1471 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 54037 29 100.0 36 ............................. TAACTAGGGTTAAGATTATTAACCGCTGTAAATCCG 54102 29 100.0 35 ............................. AAATCTTTTTGGGACATTTGCGTTATGTTTGCAAG 54166 29 93.1 37 .......AC.................... GAGGCTTATTTATTATTAATTTAAATAAAATAAAAAC 54232 29 93.1 37 .......A......A.............. TTTCTTTCTCTTTCTTTTTCAAGTAAAGTTTTTTGTG 54298 29 89.7 0 .......A...................TC | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 95.2 36 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTAAAGAAGTAAGAGGCGGAGAAGAAAAAAGATTTGATATAGTTATAACCTATAATAAAAAGATGTATATTCTAGAACTTAAAATATGGAGAGGTGAAGAATATCATAAAAAAGGTTTAATACAACTAGCTGAATATTTAAATCAATACGGATTAGATAAAGGATACCTTCTAATATTTGATTTAAGAAAATCCACAAATCTAATAGGTGAAGTAGATGAAAATTATATAGGTATAGAGAATAATAATAAAAAAATAATACAAGTTTATTGTTAGAATAATATATAAAAAATGAGTATAGATAAGAACAGGACTCTAAAGTTTTTTTCAACCAATTCTAATTCAAAAACCTATTTTAAGCATTGAAGTATAAGGCTTAGAATAGGTTTTTGTTATGTATTTTTAAAAAATCAAAATCACCTGGAAAAACTTCTATAAAACCTTGTAAAATCAATGGGCGTATGATATTCTTAGAAATAAAGAATGGCTATTTTGCTATGG # Right flank : CAAGAAATGCAATCATCTAATTTGGGATAATCATTTATACATAGTAATAATTTTTGAGTTAAATTGTAGGACTTTTATTGACTAAAATATTTTTGAAAATTAGTTTTAGTTTCAAATTATAATTTAGAATATTATTGAAATTATAGCCCCCATTAAAAGAAAAACTCTAAACTTCTTTTAATGGGGGCTATATAAATTGTTAGATACTAATTATTTAAAAACTTATTTAATGAATCATTATCTTTAAAGAGTTTTTCTAAGCTGCCGTATTTTTGTTCTAAGCTTTTTCTATTATATTCATAGGATTCTTTTTCTATATTGTCTACATTAAATTTAATAATTTCAGCATTTGTTACAAGAGATAATAATACTACTGCATTCTTTTCTAAAAGCTTGGCAGGCTTTTTATCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACGATTATTTCGTATGGCTCTTTACTAGTTTGTAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 58316-58542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082942.1 Clostridium sporogenes strain FDAARGOS_1471 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 58316 30 100.0 35 .............................. AAGCACAGCTCAAGCAAGTTCAACTATGCTAGAAG 58381 30 100.0 36 .............................. CAACATAAATAATATGTGGTGGATAATTCTTAATGA 58447 30 100.0 36 .............................. TAGTAGGGTGTTAAGATTTATAGGGAGAGAGTTGCC 58513 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTGAACATTAACATAGGATGTATTTAAAT # Left flank : GGCAGCATTTGCACAGTCAACAGGCAAAGGTAATTCAAATGGTGAAGCTAATGAAAGCCAAAATGCAGATGATAATCAAAATTATACAGTATATAAAACCAGAACTGGATCTAAATATCATAGTTCAGGATGTAGATATTTAAAGAAAAGTTGTTATGAAACAACAGTATCACAAGCACGAAATGAGGGTTTAACTCCATGTAGTGTATGCAATCCATAACATATAATAATATGTTATGGATAAGTATTAATTGTACTTTCTAGGTATTGATGAATGTATTTTATTAATATACTTAATGAATATAATATATATCTAATTAAATTTTTCCAAGCAAATTAAAAATAAAAACCTATTCTAGCTATTGAAACATAAGGCCTAGAATGGGTTCTTATTATGTATTTATAAAAAATTAAAATAACTTGGAAAAATTTTTATGAAACCTTGTAAAGTCAATGGGTATATGATATTCTTAAAAATAAACAATGGCTATTTTACTATG # Right flank : TGTTTCTAGAGAACACTTTGCTTCTATACTAGAAAAAATAATACTATAAGATGTTTTATTAGAAATGGTAGTTGTAGCTTATGCTACAGCTATCATTTTTAATTTTTTGATAAATTTTTTAAATGAGATTAGCCATTTATAAATAAAAATTTAAAATAATTAATTTATTAAATTAAAAAATATAGACATACGCTAACTTACATTTAAAATATAGAATAATACATAAAAAAGTAAAAATGTGTAGGATAAAAAAAGAAGGAATTCAATTAATTGTAAAGAATATTGTAATTATAAGGTATTAAAATAAAATAAAAATATCAATAGGGGGAATGAAGATGAAAAAGAAGACAACCATATTAAGTATCTTTCTAGCTGCATTTATAGCCTTATTATTAAATGTAGGTAATGTTAAGGCTGCGGCAACTGGACAAGATATAGTAAACTATGCTAAGCAATTTCAGGGAGTTCCATATGTTGGGGGCGGTGAAACAACAAGTGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 2938306-2938467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082942.1 Clostridium sporogenes strain FDAARGOS_1471 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2938306 31 100.0 35 ............................... CTTTATGAAGTGTGGCATAAATGCAATTAGTACCG 2938372 31 100.0 33 ............................... TTCTAGTCTTTGTCCAATTAACTAAAGTATCAT 2938436 30 90.3 0 ................A............A- | AT [2938461] Deletion [2938466] ========== ====== ====== ====== =============================== =================================== ================== 3 31 96.8 34 GTTGAACATTAACATAGGATGTATTTAAATT # Left flank : ACTCCTCCTTAGATGATATATTAATCTATTGACAAGTAATATTATTACGGTTATACCATATTATTTCGATTTAAATAAATTAATGAAAATAAAATATTAAAGTTATATTTTTGTTAATTTATTATAAAATTAAAGGAAAATTTAGTTTGGGTCAAATTTATTATAAAAATATTAATTTTTTTCATAATATTAACAAAAAATTATTTTGTATAGAAACTTTTTATGATAGTTCAATTAAAAACAATATTACGGATTATGTCGTAGTAATATTTTTTATTATTACACATATTTAAGAATATTTATATAATGAAAGTGCCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAACTATTGATATACAAAGGCTTAAGGTAGTTTTTTTATATAGATTTCAAAATATCACAATCGGTTGGAAAATTTTCTTTAGAACCTTGTAAAATCAATGGTTCTATGTTATTTTTTTAGATAAGGAATGGCTATTTTACTATG # Right flank : AATGGTAGTTGTGGTTTACGCTATAACTACCATTTTTTATTTTTTTCGATAAAAATTTTAAAAAAATAGCAATTTATTAATAAAAGTTTAAAATAATCATTCAAATTTAATTTAAAGACATATTAAAGTGCATAAAAAGTAAAAAAATGCAGGATAAAAAAAGAAGGAATTGAATTAATTGTAAGGAATATAGACATTATGATAAAAATATAAATAAATAGACAAATAGGAGGAAGCAACATGAAAAAAAAGACAACCATATTAAGTATCTTTCTAGCTGTTTTTATGGCTTTAGCACTAAATGTAGGTAATGTTAAAGCTGAAGCAACTGGGCAAGATATAGTAAACTATGCTAAACAATTTCAAGGGGTTCCATATGTGTGGGGAGGTACATCACCAAGTGGATTTGACTGTTCAGGGTTTGTACAATATGTATATAGAAATGCTGCAGGTATAGAATTACCAAGAGTTGATGTAGACCAAATTGGAGCAGGTACTCC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //