Array 1 151-901 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWT01000015.1 Neisseria mucosa strain C2004002444 C2004002444_S2_ctg_8572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 151 33 93.9 34 T.....................C.......... ACGGCATTGGTTGAAGCGGTGTCAACAGGCGTGA 218 33 97.0 33 A................................ CTGACCGGCAACAACAGATTTATCTTTTACGCT 284 33 97.0 33 T................................ ATCTCCGAAAACAATTTACAAAAGGCGTGCTGA 350 33 100.0 33 ................................. TGTTTTGCGCATAAACAAAAAACCGAAAACTGT 416 33 100.0 35 ................................. CACCGCAATTGTCTGTTCCCCCGCACTGATGCGGC 484 33 93.9 34 A...T............................ CCGGGTTTTTAAAGTACCAATTAGATTTAGTCAT 551 33 93.9 33 T............A................... AATCAGCATGGTATTGTTTTGCCCACCGAAATG 617 33 90.9 32 GT...........A................... GCCTCAAATTCGGCGTAGTCTTTGCAGCTTTC 682 33 93.9 23 .............A.................G. TACGTTCGCTCTGACACGACAGA Deletion [738] 738 33 84.8 32 T........T...A..T..T............. AGACGACCTCTACCGTACTGACAATTGATTTT 803 33 84.8 33 G.T..........A....A...C.......... CCGTAGCCGAGGGAGCAGATGTAGAGGCGCAGG 869 33 69.7 0 .......AT....A.CTCA.CA.....C..... | ========== ====== ====== ====== ================================= =================================== ================== 12 33 91.6 32 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCGGTTTGGCTGATGTTTTTACATTGTTCGTAATAGTTTAAAGCTTTGTGTCTTAAGTCCGTAGAGTATGCCATGGTTAGACCTTCAAAGTTGAATATTGTACTATTTTGTTTTTAATTGACTATATTTCTCCTGTCTTTTGTTGGTTTT # Right flank : CCAGATGGTGCTTTCCTGATTTAAACCGCCTGTAACCATCTGCTTTTTGATGGTTATGTCTGAAAAATCATCTGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCTCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAATCCTGTTACCAGCGGTGCTGATGAGATTGAAGAGCTGAAAAAAGCCAAATTGAAACTGAAAGACG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10119-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWT01000031.1 Neisseria mucosa strain C2004002444 C2004002444_S2_ctg_8602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 10118 33 97.0 32 T................................ TGCTAAGGATGGTACAAGCAAGGTTGTATTTG 10053 33 97.0 32 A................................ TCGGGCACGGAACATCGTTTTTAATTCGGTTA 9988 33 97.0 33 A................................ GGGCTAAAACAAGGGCTAAAACCCGTATATCGC 9922 33 100.0 35 ................................. GAGGTGCATTGATACACAGATGTTAGGTCGGAACC 9854 33 100.0 32 ................................. CCACAAGACAGGGAAAGGCAACACATCAAGGA 9789 33 97.0 33 T................................ TTTATCCCGGTTCATATCTCGGCGGTGCATATC 9723 33 100.0 34 ................................. CAAGCCCTAAAGACGGCATAGACGGCTCTCAGGT 9656 33 97.0 33 T................................ CGCTGAACAACACGGCGTCCGTCTGCGCATGGT 9590 33 97.0 34 G................................ CGCCGCGCTACTCTAAGACAGAGATAGCGGTTGT 9523 33 97.0 32 G................................ AATATATTGCATGAGGACAATACATTAACTGT 9458 33 97.0 33 A................................ GGACGAACAGGGGCAACCTCTTGTAAGTAATGC 9392 33 97.0 33 T................................ CCAACCTCCAAAACGAGGGCTAAACCCGTATAT 9326 33 100.0 34 ................................. CATGGCTTCGCATTGTACCTTTTGGTTTGTTAAA 9259 33 97.0 34 T................................ GGTTACACTAAAGATAGCCGAACCGTCTTTAGCA 9192 33 97.0 34 A................................ CTTACTGTAGCCTACTAGTTAAGAGTAGGCTAGG 9125 33 97.0 32 A................................ ACTGGGTATTTACTGGGTATTTACTGGGTATT 9060 33 97.0 32 T................................ GGACGAACAGGGGCAACCTCTTGTAAGTAATG 8995 33 100.0 33 ................................. TACTGCGCTAATACTGCGGTAATACTGCGCTAA 8929 33 97.0 34 T................................ TCGCAGTTGCACGGGGATATACGGGTTTTAGCCC 8862 33 97.0 35 T................................ AAAATGCTATCGATGCAACCGTTAAGCACGCTTGG 8794 33 100.0 34 ................................. TAGTTATCGGCTCTAACTTACTTATGCCTCAAGT 8727 33 100.0 33 ................................. AAGTCAATCAGCCATAAAATTAATGGCAACCTG 8661 33 100.0 33 ................................. ACGCATTGAAAACAACCGCTGTACTTTGAGCAA 8595 33 97.0 32 T................................ TCATAACTGGCAATTGTATATGCGTAACAAAA 8530 33 97.0 33 A................................ ATGTATGTTGCGTTATCAACAATAGGATATGTG 8464 33 97.0 33 G................................ TTTTTAAGTATGAAATATTTGATTTTGATGTGG 8398 33 97.0 33 A................................ GGACGGCTGTGTATAGCAATAACTGCGCGGCTT 8332 33 97.0 33 T................................ CACGCGCTTCAGCCAGCGATATATCAGGATATG 8266 33 100.0 33 ................................. TGTGAGAATAGAAGTCGAATTACATGATGCTGT 8200 33 97.0 33 T................................ CCGAGTTTTTAGAGTCCGTAAAAAGAGGGAAGA 8134 33 97.0 33 T................................ GCCTGTTGAGCAAATCATCATGACCGTGAATAT 8068 33 97.0 33 T................................ TTTTTGGAGTAACGAATGGCAAAGTTATACGCA 8002 33 97.0 33 G................................ CTTTGGCAGCCAAAGCTACACAGTGGGCGAAGA 7936 33 100.0 33 ................................. GACTGTACGCCCTTGTTCTCGATTTCGTTCATC 7870 33 100.0 32 ................................. CGCTGTGAGTCTTGGCTGTGGGTATATGGTTA 7805 33 97.0 35 T................................ TCGCCGAACGACATCTACAACTGGCCTATCTACTA 7737 33 100.0 33 ................................. ATGCTTTCGCAGCGAGCGTGTGAATAAAGCGGT 7671 33 100.0 33 ................................. ACAAATCCGGTTCGAAGAACTCATGAACATTAG 7605 33 97.0 34 G................................ TTAGGCGACCATGAGACGTAGCCATCATAGCCCT 7538 33 100.0 35 ................................. AATACGACTTAACTCGATTGAGGTTGTTAGCGGTA 7470 33 97.0 33 G................................ ACCGCTATCGACAGCAATGCCTTGCAATGCCTG 7404 33 100.0 34 ................................. ATGCTTGTACGCAAACAGCGTCAAGAAAAACGAA 7337 33 97.0 33 A................................ CGTCGCATTGCCGATGTAAGTCAGGCGCACGGT 7271 33 97.0 33 T................................ TCGAAGTATATTTCACGCGCCGCGTCCGATGGG 7205 33 97.0 34 T................................ CATCGTATTGCTCGACAGTCAAATCGAAGAACTT 7138 33 97.0 33 A................................ ATTTGCGGTTTGCTCCTGCATAAAGCAGTGTAG 7072 33 97.0 34 T................................ AGACTTTGTAATGCCATACTTTTCCATCATGGCA 7005 33 97.0 32 A................................ GCAAGTTTAGATACCTGAGCGGCGACGGCTTT 6940 33 100.0 32 ................................. GTGTCGAGCCTACGCCGTTTGTGGCACAGGTA 6875 33 97.0 34 A................................ AGCCGATTGTAAAGAATGACGGTTCGCTTGATGA 6808 33 97.0 33 T................................ AATGTATTGCATGAGGGCAATACATTAACTGTA 6742 33 97.0 37 A................................ AAACTTCCCGTGCGGTTTCAACGTTGGTTGTTCAGCA 6672 33 100.0 34 ................................. AAACGTTGCTTAGAAATTGGAAATTGATTGCGGT 6605 33 97.0 32 T................................ ATTAATAGAAGTTGACACAGGTAAGGTTATAT 6540 33 100.0 33 ................................. ACGGTATATGCGCCTACTTCCATGTGCAGGCGG 6474 33 97.0 34 T................................ GCCTCAAGCACGTAGGTAATAACGTGTAATGCAG 6407 33 97.0 32 T................................ TACTCGTCCCGTCTGCCTGGCTACGTTCAAGG 6342 33 100.0 33 ................................. AAGGATTGCCACGCACTAGCGCGAACGAAAACG 6276 33 97.0 34 G................................ TTCGAACCGGATTTGTGAAACAAATAGACAAGTA 6209 33 97.0 31 A................................ TTTGGTGTCGATGTGAAACCACAATATCTAA 6145 33 97.0 34 T................................ ATAACGGTGGCAACGGCACGGGCGCGACACAGGA 6078 33 100.0 33 ................................. AATAGATTATTTGAAATAAGGCTCTATCTTATT 6012 33 97.0 33 G................................ TATACAGGGCTTTCGGCGTTTTTGTGTGTAGCG 5946 33 97.0 33 G................................ TAAAGGAGCATTTAAAAATGGCTAATACCCAAA 5880 33 100.0 33 ................................. AATAGCCAAAGGTTTAACAAACAAAACCACTAA 5814 33 97.0 35 G................................ AGCCGCAGTTATTACGCCTGTTTGTACACTTTGCG 5746 33 97.0 33 G................................ AATCAGCATGGTATTGTTTTGCCCACCAAAATG 5680 33 97.0 33 G................................ CAAATAAGCCCCTAAAAACCTATGTGAAAAATT 5614 33 100.0 34 ................................. AAGTTGACTCTGCCCAAACTGGACAACCACGGAG 5547 33 97.0 34 A................................ GCCGGCATGAGCCCGCAACAGAAAAAATCAGGCA 5480 33 100.0 33 ................................. AGGCTGTTTCTAATGAGGCAAACGTAGCAACAA 5414 33 97.0 34 G................................ TTCAGGTATGCGCCCGCGCTTTTTAATCCTGCCA 5347 33 97.0 33 T................................ TCAAGGTGTGCGGGCTGATAAAATCGCCCACCA 5281 33 97.0 33 A................................ TTTGCAAATCGGCTACAAAGGAATGGTGCAACT 5215 33 100.0 32 ................................. AAGGAAAACCTGCTAAAAGCAAGCGGCGTTAA 5150 33 100.0 33 ................................. AATCAGCGAAAGCCGACGGCCTTGAAGCAGGCT 5084 33 97.0 34 G................................ GACTATTGCCGCGTCATCGTGTCTACACCGCTGG 5017 33 97.0 34 A................................ ATCTGCAACATCAACACGAACGCCATGCTTTAAA 4950 33 100.0 33 ................................. TCACGGAAAAAACTCCTAATCCGAGGGCTGAAC 4884 33 97.0 33 G................................ CATGTCTGAAGCGTTTTATCGCGTTTGGAAGCA 4818 33 97.0 32 T................................ GCGGCATTTCTAATCTTTGAAATACGGTCGGG 4753 33 97.0 36 T................................ TACGACCGAAACGAAGCGGTAGAAACTGCTTTAGAA 4684 33 97.0 33 G................................ CCTGCTCGCCGGTTATCCATTGGTTGCCGATGA 4618 33 97.0 33 T................................ CACAATGTGCCGTTGTACTCAGGTTTGATGATT 4552 33 97.0 34 T................................ CAGTGGTTTATGTGTAATGAAAAACGCAGGATTA 4485 33 97.0 33 A................................ ATCTATCCCGATCCGTTTGGCGATACAGGTTTT 4419 33 97.0 35 A................................ AACAGCAGAAATGTTTGTACCGACCTTAGCGGAAA 4351 33 97.0 33 A................................ CTGCCCGCCTGCCACGTGGCGAACGCCCCCGGA 4285 33 97.0 34 G................................ CTGCCCGCCTGCCACGTGGCGAACGCCCCCGGAG 4218 33 97.0 38 G................................ GAGCATAGGCTCACTGTGTTTTTTCGTCAGTTTCAAGG 4147 33 97.0 33 T................................ CAAAAAAAAAGACGGCGCTTGCCTTGGCCTTGA 4081 33 100.0 34 ................................. ACTGATTTTGTCAGTATTATTTTTAAAGACTGAA 4014 33 97.0 33 A................................ TTTTTACAAAAAAACCATTGCGAAAAAGCGCAC 3948 33 100.0 32 ................................. AGACATTGCCACCAACATTATAGGCATCGTCG 3883 33 100.0 35 ................................. ATCCTGTTCCCCGGCGTCGCCTACCGCAAAAGCGA 3815 33 97.0 33 A................................ ATTAACAGATAAATAAGCATCATTTATGGCGAA 3749 33 100.0 33 ................................. ACGGAGGACTTGCCAAAGCTGACGCAGATTTTT 3683 33 97.0 33 A................................ GTGGTAGATTCCTGTCGCTTCGCAACAACAATG 3617 33 100.0 32 ................................. GACGACCTTTTTAATGAAAAACTACTTGAACA 3552 33 97.0 34 A................................ ATCAGTTTCCCGACGTAATTGCGCCGGAGACTTA 3485 33 97.0 34 G................................ GTCTTGCTTATTCGGATCGGGATTATCTTGCTCA 3418 33 97.0 33 G................................ TTTATCTTCATCAGGCAATTTCTTTAAATCGCC 3352 33 97.0 34 T................................ TGGCCAATTCGCCCGGCACGAAACGCATTTTGCG 3285 33 97.0 33 .......A......................... TTGAAACAGAAAATCAAACACACGGTTTATCCG 3219 33 100.0 33 ................................. AGCGAAGCATTGTATTTGACCGTTGTCAGTAGG 3153 33 97.0 33 T................................ GTTTGTCGGCGGAAAGTTGGGAGCGGCAACAGA 3087 33 97.0 34 A................................ CTTGGCGAAACAAACCGGCTGACCAATGCCCGGA 3020 33 100.0 33 ................................. GCCGCACAGGTCAACATCGGTAATGTGATGGTG 2954 33 97.0 33 T................................ AGAATCTCAACGACTTGCCAAGATAGCGGCACG 2888 33 97.0 32 A................................ GATTATTGCGTGAGCGGTAAATCAATTCGTCC 2823 33 97.0 33 G................................ CATATAGGCATTACGGCGGCTAACTACCCCGCG 2757 33 97.0 33 T................................ TTTATCAAACTCGGAATGATACCAAGCTTCAAA 2691 33 100.0 33 ................................. GCCTTCAGGAACATCGAAGTAATTTATTTTGTC 2625 33 97.0 32 G................................ TACAAACAATCTGCCGCATTCATACGCTTCGT 2560 33 97.0 33 T................................ ATAAATCCTCCAATGCGCCATAGACGAACCATG 2494 33 100.0 32 ................................. ACGCCGTCGAGACGTCCTAAGTCTCCGGCGCA 2429 33 97.0 34 A................................ CCAGCCTGCGACCAGTGCGGATTTGACTTTCTCC 2362 33 100.0 33 ................................. ATGAAATAGGTTTAAAGATGCAAAGGCGGCTAA 2296 33 97.0 33 A................................ CCGTACATTCCGTCCGCTGATACGGTAGTTTAA 2230 33 97.0 32 A................................ GACAATATTACCACTCAATGTTTTAACTTTTA 2165 33 100.0 33 ................................. ATATTTGACAGTTAGAAATAAAGAAACTGGTGA 2099 33 97.0 32 A................................ AACGCTTCCAGGAATACTGGGATTTGTTGTTA 2034 33 97.0 34 T................................ ATCGCATGGGCTATGGGTCGTGCGCCTGATAGCG 1967 33 97.0 34 A................................ ATGATTGCATTTTTTTCTGCATGAATGACATTAG 1900 33 97.0 35 A................................ GACGGCAATACTGAAGCAGGTCGGAAAGGCTTGAA 1832 33 97.0 35 A................................ TGAATTTGAGTAACGATAAAGATATTGAGTTACTT 1764 33 97.0 34 A................................ TCAAAAAACTTTTTGAACGTGAGGACTTCGTCGT 1697 33 100.0 33 ................................. AATTAGTTTTACAAGACACTATCGAACAGTAAA 1631 33 97.0 33 A................................ CTTGTTTTACGACTGGTTCTAAAATTTCTGCAA 1565 33 100.0 33 ................................. ATCATTTACATAACGCACAAAATCGGACAAATG 1499 33 97.0 33 G................................ ACCATATTGATAATAGTCAACGTCGCCGCGTCT 1433 33 97.0 32 G................................ ATACCAAAAGTCAAATCCACCGCCATCGGGTC 1368 33 97.0 33 G................................ TGGAAGTCTGACGAAGAAGATTTGGCCAGACAA 1302 33 93.9 33 T...............................T AGGCTAAAGTGTTCAGTGATTTGCATTTCTTGT 1236 33 100.0 32 ................................. ATCAAGTTCGGGTACGAGTGTTGGTGGTTCAT 1171 33 100.0 35 ................................. AAGGCTTAAAACGTTCTAAAGGCGTTATGAATGAT 1103 33 97.0 33 A................................ GCCGCTTCGGCAACCGACTCTTTGGAACCTTCA 1037 33 97.0 33 A................................ CGCAGATTGGCGGTTACGATGACATTGCCTACC 971 33 97.0 34 T................................ TTCAATAACTGTTGACACTCCGTAATACATTGCT 904 33 100.0 34 ................................. TGATATAATGCTTCTGTTTTTAACAATAACAGCA 837 33 100.0 34 ................................. AGCGGATGAATAATTGCCGTCCTGCACCGCGCTA 770 33 97.0 32 A................................ ATCGATTATCGGCATCGATGCCGTGCGTCTGC 705 33 100.0 36 ................................. CCAAACAGCAAACGACCCGATGATATGTTGTCAGCC 636 33 97.0 35 A................................ TTTTCACATCGGCTATCTGTTTGCCATAGGGGGCG 568 33 97.0 32 G................................ CAATCCCAAATAGGATGATATTTAAGCAGATT 503 33 97.0 33 G................................ AAAACATATCGAAGAAAATCAAAAAGATTTTAT 437 33 97.0 34 T................................ TGCCGTCTGCGTTTTGTACGGGTTGAACGGTAAG 370 33 100.0 35 ................................. GGAGATGGCGGATTTGTACACCATCACGCTTTCGG 302 33 97.0 34 ............T.................... CTGACGTTCGGCGCAGCGGCAAACGGCAACGGCA 235 33 97.0 34 T................................ GGCGTCTGTCTTCGCACTCTTCGTGTTCATCTGA 168 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ====================================== ================== 151 33 97.9 33 CCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGTGTGCGCGTGCAATATTCGGTGTTCGAATGCGACATCGCGCCCGACCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCTAACCTACAGTTCTCATGAAAATGCTGCAAGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGTGGGTGTAACGGAAAAGGCTGTGTTATACTCGCTTTCGCGCTTTTCTTGTGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CAATCATTTTATAGTCAATTAAAATCAAAATAGGACAGTAGCGCATCGTCAAATCGGGCGTAATCAAACAATACGGTTCGCAGATACCGCTTAATATTCGCCCACACCTTCTCAATCGGGTTGAGCTCAGGTGAAT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGCGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16545-19286 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWT01000010.1 Neisseria mucosa strain C2004002444 C2004002444_S2_ctg_8558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16545 36 94.4 30 .C.......T.......................... CCACGGCTTCCGCTCCCGATCGCCATATCT 16611 36 100.0 30 .................................... AACATAGACGGACAGCAAAGCCATGCCGAC 16677 36 100.0 30 .................................... TGCCAAACCGCATGATGGAGGCGCAGGTCA 16743 36 100.0 30 .................................... CACCGCCGTTAGAACCACCGCCACCGCCAC 16809 36 100.0 30 .................................... TTTTTTGCCGGTGGTGTCCGCCTGCTTGAT 16875 36 100.0 30 .................................... GTCTGAAGCACAAACAGCATTGAAAAAATA 16941 36 100.0 30 .................................... CCAACCCGCAGCCCGTGTCATCGTGCAATC 17007 36 100.0 30 .................................... AGCCCAAGAGGCTCGGTGGGATCCCATTAT 17073 36 100.0 30 .................................... GCGGAGCGGCATTGGACGCGCGCGGCAACG 17139 36 100.0 30 .................................... AAAACCAAGAATCACAATTTCGCTGGAAGA 17205 36 100.0 30 .................................... CCGTTACCTTTGCACGACCATTCACATAAC 17271 36 100.0 30 .................................... CACAAAAATGTATCTATAAGCAGCAGAATC 17337 36 100.0 30 .................................... GCTCGTGATGACGACCTTGCTGTCTTCGCA 17403 36 100.0 30 .................................... TTATAAAGAGGTATTGCAAACACTTAAAAT 17469 36 100.0 30 .................................... GATAGGGGCGTGAAGCCTATCCGATTGGCT 17535 36 100.0 30 .................................... CAACGACCATAAATCCCGCACCAAGTGACA 17601 36 100.0 30 .................................... TGGGAATCCTTGCAACCTTTCGCACTCGAC 17667 36 100.0 30 .................................... GGTAGCTTATTCCACAAGGTCTCAAACGTG 17733 36 100.0 30 .................................... TGGTTACGCGAGCGGTGTTGTTGCGATTCA 17799 36 100.0 30 .................................... AGTAGGTTTGTTTGATATATAATAAAGTCT 17865 36 100.0 30 .................................... GCGCCCGAATGCGTATTGACCGCAAAACTG 17931 36 100.0 30 .................................... TACGGCCTTGGTCTCAAGCGGCAAGGTTGC 17997 36 100.0 30 .................................... GTCGTTGATAAAGTCAACCCAAACCGAATC 18063 36 100.0 30 .................................... TTTCTCCGTCTCTAACTGTCTGATATTCTG 18129 36 100.0 30 .................................... GAACTCGTCTCTATCATGACATTCGCCAAG 18195 36 100.0 30 .................................... CAAAATAGGCGATTACGCCTGTCGGGACGC 18261 36 100.0 30 .................................... ATATTTTGCAGGGTGCATAGCGCGTTTTTG 18327 36 100.0 30 .................................... ACCACCCTCAAACTTAATAAAAAAATATTT 18393 36 100.0 30 .................................... TTAACAAGGAAAGTTGTCCTGTTAGTGTGG 18459 36 100.0 30 .................................... GATAATATCCTAGGTAGTACAAGTAATCCT 18525 36 100.0 30 .................................... GGATAATATCCTAGGTAGTACAATGGTAGT 18591 36 100.0 30 .................................... TAGCCTTATTAGGTCTAACGGGTGCAGTTT 18657 36 100.0 30 .................................... TGTCGATAGGTTGAACGCCGGGGATATTCA 18723 36 100.0 30 .................................... AGAACAGACTGACTTGACTAGCTACGAAGT 18789 36 100.0 30 .................................... CCATCAAATTACCACCATGCTGCGAAACTT 18855 36 100.0 30 .................................... AGTAATCTCTAGGTTAATACCGGTAACTAC 18921 36 100.0 30 .................................... ATAATTTGGTAATCAGGTAATACGCAAAAG 18987 36 100.0 30 .................................... CCTTACCGATGTAGCTTGGTGGGATTATCA 19053 36 100.0 30 .................................... GCTTCGTGTGTGAAATGGCAAACTCGACCG 19119 36 100.0 30 .................................... TACTGGATACGGGATTGTTCTTGCCAGTGG 19185 36 100.0 30 .................................... AGGTTACTACAAACATAAAGCGTTTGATGA 19251 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 42 36 99.9 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GCTGCTCAATCAGCGCAACCGTTTCGTCGATTTTTTCCTGAGCAATCGGACGTTTGTGCAAAGCCCGTTCCAAACTGGTTTTCAGCTTGTGCGGATTAAACGCCACGCGCGTACCGTTGGATTTAATGACCTGCGGCATCCGCATTTCAACCGTTTCAAACGTACTGAACCGCTGCCCGCACTCCACGCAACGGCGGCGGCGGCGGATGCTGTTCGTCTCTTCCAAGAGCCGCGAATCGGTGACTTGAGTATTGGGATGCTGACAAAACGGACATTTCATAAGTTTTTGAATTTATTTGTTTGTGAAACGGAATTGTAGCCGATTGAGCTATTCCCGTATAGTCGGTGGGTTTATTATGGGTTGAAGAGGTCGTCTGAAAACGGCAAATCGAGCTTTCAGACGACCTGCGGGAAGTAATATGCGGCGCCAACTTCTGATTTTATTCTTTCTTATTTCACAGTGCTACAATGTAATCCGCATCGCTTACTCCTTCAGCCAT # Right flank : TACCTCGGCGGGTAATCCTTATTTTATAAGGATTACCCGCTTTCTTTTGTTTAAAAAACGGGGATTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCACCTAAAAGCAGTTTCATGGCGGCAAACTGCTTTTCTGTTACTTCCAAACAGCGTATCGAGCCTTCTTGCGGCAGGTTGGCACATAGTCTGTTGTGGTGTTTCTGCAACGCATCCCTGCCTTTGACAATCCGGCTGTACACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGTTTGGCGACGGTGGTAACTGGCAGGTCGAAAAAGACGATGATCCGCATAAACTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTCGGGCAGTTTCAGCAGTCTGGCGTTTTTGGTGGCAAGGCTCGGCTGGAATGAGGCCATCATTTTATCTATGGCTGCCAGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 52920-53375 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWT01000006.1 Neisseria mucosa strain C2004002444 C2004002444_S2_ctg_8550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 52920 37 100.0 32 ..................................... CGCGGGCTATGCCTAATCCCGCCCGCCTCGCA 52989 37 97.3 32 ....................................T TTCCTCGAACCTCAATATTGCTATCTTGATAT 53058 37 97.3 33 ...................A................. CAACGTTAAGGCGCACATGCTCGGCGTTTTCGT 53128 37 91.9 33 ....................A..A.A........... CAGTTGCCGATTCTTCCCGATTGGGATTCATCC 53198 37 100.0 33 ..................................... CAATTGCCTCAGCTTCTGCAATGTTCAGTTTCA 53268 37 100.0 33 ..................................... TTGTTACGGGCAACCAATACCTTTTGGAACTGG 53338 37 81.1 0 .......A............C.......T....TCTT | C [53369] ========== ====== ====== ====== ===================================== ================================= ================== 7 37 95.4 33 GTCGGAAGACTTGCCCCACGTATCGGGGATTAAGACG # Left flank : TGGCAAGATAAAATGGCAGCGCACACAGATTTAATTGTAAACAATGACGCGCACACTAAGCTCTATAAAGACTGGATAGCCGCTTTGGAAACCGCCGCAGAAAGCCCCGATTTCAGCGCAGAGCAGAAAGCCGAAATCGCCGTCGCGTTTGCCGTCAAAAAGATGGAGCAGGCGTATAAAAACTGGCTGACCGGCAAACGCCCCAAAGAGCTGAAACCCATCTTGGCGAAGCTGCGCGGCAAATAGATTTTCATCTTTGTCAAAGCCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACAGTTAAAAAGCGTTGTCGAATGCAAAGCACACGGCTATAATCCGCATCACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTCCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTTTTGTTGGTTAAGGAAAAATGCTAACTTTTCTTAACTATATAGAAGCCTGAAAATAATGAAATTTTTTAACCGAGCGCA # Right flank : TTTCAGACGACCTCAAGCCCGGGTCATCTGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAAGGCTGTTTTTGTTTGCGGGCTGTTTTTTTATAGTGGATTAAATTTAAACCAGTACGGCGTTACCTCGCCTTGCCGTACTATTTGTACTGTCTGCGGCTTCGTCGCCTTGTCCTGATTTAAATTTAATCCACTATATTGTGTTCAAACGGGGCGGCTGGCGGGGCTGTTTGAGGTCGTCTGAAAACGGCGGGTTTCGGTAGGGTTGGATTTAGACATATCGATCGGCTGCTGATGTTTCTTTGTTTTGCCGTTTCCCCATACGCCGACGTGCCGTCTGAATGCGGCTTTGTGCTTACAGTTTGCGGATACGGCGCATTTCGCATTTTCAGGTCGTCTGAAACGCCGTATTATGCCATTTTTTACTTGTCTGTCTGCCATGAATCCGCTCAATC # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACGTATCGGGGATTAAGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //