Array 1 5297-5059 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVU01000015.1 Rhodobacter capsulatus strain B41 scaffold22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 5296 37 100.0 30 ..................................... GTGACCGTCGCCATCAGAACGCCCCCGTTC 5229 37 100.0 29 ..................................... AATATCAGTGACCCCCCGACATCAGTTTT 5163 37 97.3 28 ...........C......................... CCACGGGTTGCTCTCCAGGCCTGTGTTG 5098 37 86.5 0 ..........GC.................A....G.G | C,AG [5062,5065] ========== ====== ====== ====== ===================================== ============================== ================== 4 37 96.0 29 GTCTGGCACCATGTCCGGCGGCCCTGCCGGTTGGCAC # Left flank : TTTGCCCGAATGGCGCAGGATGGCACCCCCTGGACCCCCTACAGGATGAAGCACTGACCATGGCCGACCGTCCGCAATTGCGTCTGATTGTTTACGACATCGCCAGCGACCGGCGCCGCCGCAAGGTGGTGGCGTTGCTCGAGCCACGTGCGGCGCGGGTGCAGGAAAGCGTGTTCGAGGCGCGGCTGAGCCAGGCGCAACTGACCCGCCTGCGCGTCAAGCTGGAGGCGGTGATTGCCCCCGAGGATTCGCTGCGCATCTATACCGTCCCCGATGCCGCCCTGCGCCGCTGCCACATTCAGGGCGGGCCGATGCTGGCAGACGGGGCACGGTTCTGGCTGATTTGATCGCCGGGACCCAGTGGAGTGGCGAAAGTTTATCTATCACAGTGGGTTAGGCAATGTCCGTGGGAATTATGTAATCCGCCTCACAGCGAAATGCCTAACCTAGTGGAAAGTGGCCAAAAAATCCCTTGTTGACAGAGGGCTTCCAGAGGCTCA # Right flank : TGCGTACGGTGATCTGAGGGAAAGGCCCGGCTCAGCCGAGAGCGGCGAGAAGCGCGGGCAAGGGGGGGCTGGCGGCAAGGCCCCAAAATCCGCGCCGGGGCAATTCGCCACCGCGCCAGCCGCCGGGAAAGGCCGCATCGAGCCGCGCGATCCGCGCGCCCGCGCCAAAGAATTGCACCGTATCCGGGCACAGGATCAGAAGATCGCGCCGATCCCCCGCCGCCACCAGCGGATCTGCCACCGTTGCGGTGCGCCCATGCGGCAGGGTGATCACGATCAGACTGCCCGCCAGCGCGGTCTCGGCCTGCGCCAGCGCCGCAAGGCCCTGCGCCTCTTCCTCAGCGGTGATGCCCTGCGCCTGCCGATCGCGGCGGCGGATTTCGGCGATCTCGGCGGTCGTGGCGCCGAACCGCTCCAGCGCCGGAATGTGGCCGATATCATTGGCGGCAACCAGTTCGAAATCCCGCGTCCAAAGGCTTTCGGGCAGATCGAGCAGCGTA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGCACCATGTCCGGCGGCCCTGCCGGTTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 138509-142380 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVU01000062.1 Rhodobacter capsulatus strain B41 scaffold7.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138509 29 100.0 32 ............................. CTTCGGACCAACGGCGTCTATTACATGGATGA 138570 29 100.0 32 ............................. GCAAAGGGCGATAACTTCGCGCGCCAAGTCCT 138631 29 100.0 32 ............................. ATCCCCGAGAGCATGGCGCGAGTCATGGCGCC 138692 29 100.0 32 ............................. CGGCATCATGCCGTTGACCCAGGTCGATTTGG 138753 29 100.0 32 ............................. GCGAAATTGATATTCTCGTCCATGCACCCCGC 138814 29 100.0 32 ............................. GACGCTGAAAAATGGCTGAACGTGTCACGATC 138875 29 100.0 32 ............................. CGGCGTTGCGTTATGCGGCAGCAGGTCAGACA 138936 29 100.0 32 ............................. CCGCCGACCGATGTAGTCGCTTTGCGCAGGGC 138997 29 100.0 32 ............................. GTCGCGGGTCGCATCATCAACCTCGACACCGA 139058 29 100.0 32 ............................. CGACCCTCGCGGCGCTGGAAATGGACCAGATC 139119 29 100.0 32 ............................. GTTTCAGAGTTCATGCTGATATCTCCACATCA 139180 29 100.0 32 ............................. CATTTGCAAAAGCCGGGGCGATGATCGCCGAA 139241 29 100.0 32 ............................. ATCTTCGGCGCGCGTGATCGGATATCCAGCGA 139302 29 100.0 32 ............................. GTCGCGGGTCGCATCATCAACCTCGACACCGA 139363 29 100.0 32 ............................. GGCCTCGGCGCGTGGGCCGCTGGCGGTGCTGG 139424 29 100.0 32 ............................. GCCGAGATGGATCAGGGCGCGGTGGTCAACTG 139485 29 100.0 32 ............................. CGTCATAGTTCCAGAGGGTCCGATACCCCGGA 139546 29 100.0 32 ............................. GTCGATGTGAAGCCGGGCGACGTGGTGATCTC 139607 29 100.0 32 ............................. AACCTGCTGCGCTCGACGCGCCGCTGCGGGCC 139668 29 100.0 32 ............................. ATCGAGATCGATGGTGCGACAATGACCGAATG 139729 29 100.0 32 ............................. GGGATCCTCGTTCCGGCCGATGTGCTGCGCCG 139790 29 100.0 32 ............................. GAGCCAAACTGAACATACCCGGTTCCTTTCGG 139851 29 100.0 32 ............................. ACGAAATGGGTCGGCGCTGGCGGCGAGACTTC 139912 29 100.0 32 ............................. GAAATCCATCGGGTCGAGACGCGACAGAACGG 139973 29 100.0 32 ............................. GGGGAAACATGGCCGACGAACTCACGGCAAAA 140034 29 100.0 32 ............................. GGCGTCAGGGCGCGCTCATGGCCGCTTGGAAT 140095 29 100.0 32 ............................. CTGTCCGATCGCGTGCGCCGCCTCGAACTGAT 140156 29 100.0 32 ............................. GCGCTCACGGGTGGTCTGGTCTGATGGACTTT 140217 29 100.0 32 ............................. GCGCAGCGTTCTCGCGGCGCAGGTTCGCGTTT 140278 29 100.0 32 ............................. CCCTGTGCCGTAAACGTTGCCTTTCTTGGTGA 140339 29 100.0 32 ............................. GTTTGGTATGATACAAACATGCCAATTCTCAG 140400 29 96.6 32 ............................T TACGTTATCACGTTCAGTTAAAACAAATCTAT 140461 29 100.0 32 ............................. ATGAATTGCTAGTTTTGGCGCTTCGCAAACTA 140522 29 100.0 32 ............................. CGCAGATCGTGCTCGGCTTCCGCGCGGCGAAC 140583 29 100.0 32 ............................. ATCGGCACCAACCGCATTCAGCCGCGGCTTGA 140644 29 100.0 32 ............................. GGCCGGTGGGTTCGGGGAAAACGACCACGCTG 140705 29 100.0 32 ............................. GCACCTGAGACTTCGATGGTCAAGCACATCGA 140766 29 100.0 32 ............................. GTGTCGTTGGCCTTGGAAACCGGCACCGGCGT 140827 29 100.0 32 ............................. TTCCCAGGCCTCGCGCACGCGGCCCGTGGCGT 140888 29 100.0 32 ............................. GTCGACAGCCTGCAAACCGAGACGCACGGCGC 140949 29 100.0 32 ............................. CAGAGCCATTTCGTCCCGCGTCAGCGGGTGAG 141010 29 100.0 32 ............................. GATGCCACTGCATGTTGCGCATGACGCACCTT 141071 29 100.0 32 ............................. CTTCTGACCACCAAGAAAAGCGGCATTAAGCC 141132 29 100.0 32 ............................. CCGTAGTGACGCCCCTGCAAGAACATCTTCGA 141193 29 100.0 32 ............................. GTGATCAGCTTGGAGGCGACCCAGCCCACGGA 141254 29 100.0 32 ............................. CGACGCGATCACCTGATAGTGCGTCACCGCCG 141315 29 100.0 32 ............................. ATCACCTCGGCCGTTGCGATTTCCGGCCGCAT 141376 29 100.0 32 ............................. CCCTGCATGAAACTCGCGTGACGCTGGATAAC 141437 29 100.0 32 ............................. CTGCGGACGAATGGCGTCTATTACATGGATGA 141498 29 96.6 32 ............................T CCGGTCGCGCAGGGCTTGCAGCTTGTCGAGGC 141559 29 100.0 32 ............................. ATTTTCGCCTCGCTCCCGGCGGCGTCGGTGAG 141620 29 100.0 32 ............................. TTCATTGACGGGGTGGCCCGCGCGGCGGCCGA 141681 29 100.0 32 ............................. CTGTGGCCAACACGACGCCGCCCGCGGCAATG 141742 29 100.0 32 ............................. CAGGATCGACGGGTGCGCCTTTGGCCTTGCGA 141803 29 100.0 32 ............................. CGAGAACGGCTTTTGACCGGCGGCAGTGATGA 141864 29 100.0 32 ............................. TTCCAGCCGGGCGGCGAACTTGCCGGGCAAAC 141925 29 100.0 32 ............................. ACGGGAGCGTCGAGCTCCTTGTGATGCAGCCG 141986 29 100.0 32 ............................. GGGTCCGAGGGCGGGATGCTTTCGCAGACCGT 142047 29 100.0 32 ............................. CCGAGCGGCTGGCGAAATATCAGGCCGTGGCG 142108 29 100.0 32 ............................. AGATACTTGCAGACGTAACGGGCGGATTTTTC 142169 29 100.0 32 ............................. GAAGTTGCCCTGCAGCGCGGCATCAAGGGTGC 142230 29 100.0 32 ............................. CCTTAGTATGCAGCGGGGCGCGGTTAAAAGTG 142291 29 100.0 32 ............................. CCTTGAAGGAAGGGCGCCCCGAGGTCGATTTC 142352 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 64 29 99.9 32 CTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CTTCTGGGCCGGATCATTCCCGCCATCGAGGAGGTCCTGACAGCGGGCGAATTGCCCCGCCCCGAGCCGCCGCCCGAGGCGATGCCGGTGGCCTTCGAGGAAGGTCAGTCGGGCGATGCGGGGCATCGGGGATGATGGTCGTGGTGATCTCGAACGCGCCGCCCCGGCTGCGCGGGCGTCTGGCCGCCTGGCTCGTCGAGGTGCGGGCGGGGGTCTATGTCGGCGATTATTCGGCGAAAACCCGAGAGATGATCTGGGAGCAGGTTCTGGCGGGGCTCGAGGCGGGCGATGCGGTGATGGTCTGGAAAGCCCCCACCGATCAGGGCTATGATTTTCGGACCGCAGGCCGAAATCGCCGGATGCCGGTGGATTTCGACGGGCTGAAGCTGGTGAGTTTCAAGCCGGACAGGTGAGGCCGTTCTGAAGCGGAAACCCGGAGAAAATTCGGTGCGCTCTTTGACATTGTGAAAAACTTGGTAGATCAATGGTCTGCAGCAAGA # Right flank : GACCATCGCGAATGTGGCCCCCCTGCGCAACGTCTGTTCGCCGCGTCGCGGATGCCTTTCAGCTCGGCCGCCTGCGCCGTCACCTGCGCCTGCAGCGCGATCAGCGTGTCCTTGCCCGAGACCGCCAGGCGCGCGGCGGCGATCAGCGCATCCCGGTTGCCATCGACGCCGAGGATCGTGCCCAGCTCGGACTGCAGGGCCACATCCTCTTCCGGCTTGCCCTTCGCCCCGGTCATGGCTTCGACCGCGGCGATGATTTCGTCGAGCGTCGCGGTTTCGGCCAGGCCGAGCGCGCGCGCCAGTTTCGTCAGATCCATGTCGGACTCCGAGTTGAGCGCGACGAGGCCGCGCAGGTTGGGGTAATTGACCAGGGACGCCCGCGCGATCCGGCGCACCGTGCCATCGGCGGCGTGGATGATGACGGGCGAGATCCCGCGATACGCGCGCTCGGCCAGCAGCGCGACACCCGCAGGGTTCCATTCGACCTGCCCCCAGACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //