Array 1 536323-534694 **** Predicted by CRISPRDetect 2.4 *** >NC_023151.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 536322 30 93.3 39 ......G.............G......... CTGAAAGAGGGAACGAATGTGTTTATGCGACGAAAACTG 536253 30 96.7 35 ....................C......... TTTGGGAAGAGGAGGGAGAACATGAGGATAAGTGA 536188 30 100.0 37 .............................. TAATCAAAATGTATCCAGACGGAACATCTAAAGAATT 536121 30 100.0 37 .............................. TTCCAGTCCAACCGTCGACTGAGTGTGAATGACTCCC 536054 30 100.0 36 .............................. CACCCGTGATGTCTATCGTGTTGCCTGTCGTTACCG 535988 30 100.0 36 .............................. GCGTTTCCACTCGTATCTATCGCTCTCACACGGAAG 535922 30 100.0 42 .............................. TTGTGCCTGTAAAGGGGACAGTAGATACTGAAAGTTTATATT 535850 30 100.0 35 .............................. CCGACAGCGAATCAGCGAATCCCCACGATGGTGCG 535785 30 100.0 39 .............................. AGGTGCAATCGCAGGCATCTGGAAGCTCCAGAACAAAGG 535716 30 100.0 36 .............................. CAGAGTAATGAGAGGAGTCATATTTGAAATCGATGA 535650 30 100.0 36 .............................. CCGGAAGTAGTAGGGTTCGTCGCCGGGCTCTGTGAT 535584 30 100.0 36 .............................. GTCTGAACTCTGCCTTGAACAATGCCTCCGAAGAAT 535518 30 100.0 36 .............................. CATTTGTAGCACTATCATAAGTCAGAGTTTTCCCCG 535452 30 100.0 36 .............................. AGGAAACGAATACGAAATCTGGATAAGAGAAGCAGA 535386 30 100.0 35 .............................. TATTGTGCTTTTGTTCAGAATGCTTTCGAGTCTGT 535321 30 100.0 38 .............................. TTTGAGCCTGATCGGGATAGCAGAGAACTTCACGTGCT 535253 30 100.0 36 .............................. GTGTCCTTCAGTAGCAAATGGAGCTACAGGAAGAGC 535187 30 100.0 37 .............................. ACTTGAAAGTGCTTGAAAAAGTTGTGGAATAGCGCTA 535120 30 100.0 35 .............................. TGCGAAGGATTGTGGTAGAGCATATGAAGTATATA 535055 30 100.0 37 .............................. ATCCATTCACAATCCCGACATTGTGAAGCCAACCACG 534988 30 100.0 36 .............................. AAGTACACATCAACCATTGTCCCTTCTGTTACCTGG 534922 30 100.0 35 .............................. TCGATGCGATGGGGTGATAGGGTGCTTCGATGGAA 534857 30 100.0 37 .............................. AAGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 534790 30 100.0 37 .............................. GAAGAAAGGAGGATGAGGAAGATGGGAAAAGAGAACC 534723 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 25 30 99.6 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAACGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCCAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACCTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGAAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGTTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTAACTTCTCGAATTCAAATCACTTACACGTCATAGATTACCGCAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGTTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 548486-549051 **** Predicted by CRISPRDetect 2.4 *** >NC_023151.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 548486 30 83.3 39 .....TG.....A.......G.G....... AATGAGGTTATTGCTTTTGAGTCGTATCACTGGTTTAGA 548555 30 96.7 36 ....................C......... CGAGATCCGATACTGGGATGAGAATTTAGCACAGGT 548621 30 96.7 39 ....................C......... AAATACGATACTGAAAATGGCAAAGAAACGCGCTCACGT 548690 30 96.7 37 ....................C......... TAGGTGCAGTGGTTGGATTGTAGTAGCTCATACTAGT 548757 30 100.0 37 .............................. TGTCAACGCGCTACGGGCAAATGGTGCTTGAGGTTGA 548824 30 100.0 37 .............................. CTTCCAGCTCAGTACAGGACGAATGCCGTCTGGATCA 548891 30 100.0 35 .............................. ACATGCAAAATCCCAAAACACTCCTCCTTCTCTGG 548956 30 100.0 36 .............................. TTCTCCAGTACACACCACCTTCTACATCAAACCTTC 549022 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGATCGACGATCTCTTTCCTTCTTGCCCAGAGAATCACTTCTTCTCCGTTTTCATGCAGCATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCAAAAACAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATTGGAT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGTTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTATTAACTTCTCGAATTCAAATCACTTACACGTCATAGATTACCGCAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGTTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACACATCACCTACTTTGTGA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 3 575888-576449 **** Predicted by CRISPRDetect 2.4 *** >NC_023151.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 575888 30 73.3 32 A....TG.G..........TGC.....G.. GATCAAAAGGAGCACAATTCACGAGGATCACT 575950 30 100.0 37 .............................. ATCTTCCTTGCGAAATACTCAGAAAATGGCTCTCCTG 576017 30 100.0 37 .............................. TCGACAATGCACTGATTGACTCGGTTTCAGACACCTA 576084 30 100.0 39 .............................. TACCTACCCAGCGCTGTCTTTTCCTGCGGACTCTTCCAC 576153 30 100.0 37 .............................. CAGAGAGGGTTTTCAGAGGATCCTACAGACAAGATTA 576220 30 100.0 36 .............................. TTGGTGTACCTCGTCGAAGGATTGAATGTTATCGCT 576286 30 100.0 37 .............................. GATGTTCTTTCCTAGATGTTCCTCAATCTCCACAAGT 576353 30 100.0 37 .............................. TAATTCAGGGCATTGATGACCTGATCCACGATTGTCT 576420 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTGTTCTCGTTGCAATTGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTTTCCGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGGATTCTTCTGGAATTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTTTGGGTATTCTGGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGGTAGATCCGTTTTCTGTGATTATCGCGTTTGGAGTTTCAGCAAGTGTTGGATTGTTCTTCGGATTCTATCCTGCGTACAGAGCCTCCAGGTTGAGCCCGATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGTAAATATAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTTATTTTGTATCAAAATCGCTGAGAGACTTTTTGAACTGAGGCAAACTCAGGAG # Right flank : CCCATTGAGTTCAAAAGGAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGGATTCCTCAATGTGTTAGAAGTTAACTATTGACTCCTTGAATTCAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 4 942517-945276 **** Predicted by CRISPRDetect 2.4 *** >NC_023151.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 942517 30 86.7 35 T...T.G...A................... AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA 942582 30 100.0 35 .............................. AACAACATTTATGAATACAAGATCGTCGTCCAACT 942647 30 96.7 37 ....................T......... TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA 942714 30 100.0 36 .............................. AGGTGTTTGACAACACGAAACAATGGGAAGACATCA 942780 30 96.7 36 ....................C......... AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT 942846 30 96.7 37 ....................C......... TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG 942913 30 96.7 37 ....................T......... AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC 942980 30 96.7 37 ....................T......... AAAAGCTGGTGGTACTCGAAGCCCTTCGTAGGCTTTT 943047 30 96.7 36 ....................T......... TGAGAAGAGAATACGCAATATTAGTATGGCTTGAAG 943113 30 96.7 36 ....................T......... AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 943179 30 96.7 37 ....................T......... ATAGGCTGGACAGGTGCATAGGCCTCTTCGAGTTCGA 943246 30 96.7 37 ....................T......... CTGTCGAATCTTATTTTTGCTTTTCCTTGCAATACAT 943313 30 96.7 36 ....................T......... TATCTCAACCTGTGACTGGCCGGACGGCTAGATCAG 943379 30 96.7 39 ....................T......... AAACAGATGTCCCCCTAAAGCTTGGCGACATCATCACAA 943448 30 96.7 35 ....................T......... AGCTCGCACAGACAGAGATACCACAAGCGATCGAG 943513 30 96.7 37 ....................T......... GTCGTGGATATCTGCATCTCTCTCCTCTGTACTACTC 943580 30 96.7 37 ....................T......... AGATGTATCCGGATGGAAGTACCAAAGAGTTCGACAA 943647 30 96.7 36 ....................T......... GTTCATACAAATCTTTCATCGTTCTCGCAACATCGC 943713 30 96.7 37 ....................T......... GATGAAGACGTACTTCGTGAAGAAGATGCTGGAAAAA 943780 30 96.7 38 ....................T......... CAATTGCAGGAATATCCTCCACCTCATACGCCTTCACA 943848 30 100.0 38 .............................. AGAGGTGATCATTTCGAAGAGACGGCAGAGGGAAATAG 943916 30 100.0 37 .............................. AAAACAAAAACAAAAATATATATATAGAAGATAGTAG 943983 30 100.0 36 .............................. AAGCACACCTTACCATCTATTCTTTTCATTGTGGAG 944049 30 100.0 36 .............................. CAATTGAAATTGAGGCGAGGCATCTGAGATTATCGA 944115 30 100.0 37 .............................. TGAGTTCACGAACGTGCTACAAAGAGTAATAGAAGCA 944182 30 100.0 36 .............................. TGTTTTGTCATTATCAGAAGAAGATTTTATACTCAA 944248 30 100.0 36 .............................. GGAAACGGGCTTGTGATGAGCGTTTGCGGGCGTTTC 944314 30 100.0 35 .............................. GTTGTTCTAAGTCTTCAAAAGGATTTACAAGTTTA 944379 30 100.0 37 .............................. AAGGGAACAGAAGGCAAGCAATACCTACGAGATGCGG 944446 30 100.0 36 .............................. ATATAATAAGGAAATATGATTATATCGGATTCGAGA 944512 30 100.0 36 .............................. AAGCACACCTTACCATCTATTCTTTTCATTGTGGAG 944578 30 100.0 35 .............................. TAACATCACCACCTTTGCGATTTCTACAACGTATA 944643 30 100.0 37 .............................. TTGTATGATCGCATGTCTTTGTAAAAGAAATAATCGA 944710 30 100.0 37 .............................. TTTTCCAGTTGAAGTTGTCTGAGAAAAGGTAAAACTT 944777 30 100.0 37 .............................. TCAGGGAACACCTCGTGCCTGAACGTGGGCTTGTCGC 944844 30 100.0 36 .............................. TTTTTATCAACGAGAATATGCAACGTTGATATGGAT 944910 30 100.0 37 .............................. GAAATTTCGCCAGCAAGTTGCTTGATGCTGGAGTATG 944977 30 100.0 37 .............................. CGGTGTATATGGATGTTGGAGAGGACAGTGCTCGCAT 945044 30 100.0 37 .............................. TGGGAAATGTCCCCCGAAGACTGGAAAAGGCTTATAT 945111 30 100.0 38 .............................. AAACTCTCGACGATGCACAGCAGAACATCTCCGACAGT 945179 30 100.0 38 .............................. GATTTTGGGTGTGGATGTCCCCGTTAACAGATCACAGA 945247 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 42 30 98.3 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : GGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGATTTGTAGAGTTTGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATCTGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATTT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 5 1035377-1034550 **** Predicted by CRISPRDetect 2.4 *** >NC_023151.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1035376 30 83.3 35 C...T...............GG......T. TCTTCTTGATAGCCTTGTAGTTGTCTGTGGTCATG 1035311 30 96.7 37 ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 1035244 30 96.7 37 ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 1035177 30 100.0 36 .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 1035111 30 100.0 37 .............................. AGAAAGTAGTCGACAAGTTCGTTGATTGTCTCGTCGC 1035044 30 100.0 36 .............................. AGAGCTCTCCCGGGCCGTACCATCCAGGCCACCCCA 1034978 30 100.0 36 .............................. TACAGAACATTGCACTGGAAGAGAAGAAGCAGGAGA 1034912 30 100.0 37 .............................. AGACATCTCGATCCTGATGAAGTAGGAGGGATACTTA 1034845 30 100.0 37 .............................. AAATCAGGATTGAACCTGACGTAGAAGCTTTGTACAA 1034778 30 100.0 37 .............................. ACTTAAAGGAGGCAAAAAGACAGGAAAGAAGGGACGG 1034711 30 100.0 36 .............................. AGGCAGATCTGAGGATCATTGCAGAGCGAGGAAACA 1034645 30 100.0 36 .............................. AAGGAACTCAGGACGATTCTCTGGATCGGTCTCAAG 1034579 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.2 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GTCAATAATCTCTTCTTTATTTCTCTCGAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTTGAACCACTAGATTTGTCGAGAAATTTCATGGTGGGGGAAACAGAAGAGGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAGATTTTCGAGTTCTTACCCCCTGGTTTTTTCTCGATAGAAACAACATCCTTGAAAACCAAACCCTCTGAATTACTCTCAAGAAAGATAGCTATTCCTTCATCAGAAGGAACTTCTTCAGCGAAGTTTGAAAAAGAATCACCACCAATTTTCCCAAGATTGTATATCTTTTCAAGCACCCCTATCCCCCCTGCGGTGTTATCATTCACATTTTAACGTACACTTTCTGACAACAATCTAAATCCATAGTCATTGCACCTGAAAGGAAGTATTGAAACAGTATCGAAGATGAAGAAATCATACGGTTTGTGGG # Right flank : CCGTTGAGTTCAAGAGAAATTATATCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCCTTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTTAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAATCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCCACTTTGTGAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 6 1183461-1183234 **** Predicted by CRISPRDetect 2.4 *** >NC_023151.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1183460 30 100.0 36 .............................. ACAAGCGTTGTGCCATCACTACTTGTTCGAAGCCCA 1183394 30 100.0 35 .............................. AGACGTTCCTGTCGCTGGTAGTGTCGAATATTCGT 1183329 30 100.0 36 .............................. TTGTGTCTGAAGAATGAGCATCGAGTTCTACACGAT 1183263 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : GCCAAGGGAAAGACACCGGAGGAAATCTACTCAACAATTTTGAAAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGCGATGGAAGCTTCAAGGGTTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAAAGAAATAAAGAAACTCTCGGCGATTTCTCCGAACACCACGGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAGTACAGAATAAAGCTTCCACCAACGATCTATGGATTCGAAGAGCTCCGATGCAAAAACGAGAACTGTATCACCAATCCCGCACACGGTGAAAATGCTTCACCTTCCTTTGTGAGAAACGAAAAAGGACAGTTCATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTTGCGAAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTATTTTATAGCCAAGCTTATCTGGACTCGGTTGGT # Right flank : CCGTTGAGTTCAGGAGAATTTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTTTCCATAAACCATTCTAACATACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAAACAGAAAATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATATTTCACAAATAGATGAAAGAAGGTCTCCCTCAATGTGTTAGAAGTTAACTATTAACTTCCTGAATTCAAATCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCCAGTGCCAGATACACGTATCACCCACTTTGTGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 7 1294776-1295339 **** Predicted by CRISPRDetect 2.4 *** >NC_023151.1 Thermotoga maritima MSB8, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1294776 30 73.3 37 TG...TG.......G.A..C.C........ TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC T [1294779] 1294844 30 96.7 36 ....................T......... TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA 1294910 30 100.0 36 .............................. GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC 1294976 30 100.0 36 .............................. GTATGATATGTTCCGCAAACTACAACAAGAAGTCCT 1295042 30 100.0 36 .............................. TTAGAAGCCGTTTCTAACCTATAAGATTAGAAAGAT 1295108 30 100.0 35 .............................. TCAATGCGTGTGCGGAAAACGATTTTGCCGTCAGG 1295173 30 100.0 36 .............................. GGACAATTTGAAGGTTTGAGGGAGGGATGAGTATGA 1295239 30 100.0 41 .............................. GGAAGATCCTCGCTTAACAATCCAGAAAGCAGGGGAACTGA 1295310 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 9 30 96.7 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAAGAAACTGGTACCGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAACATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCATCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGAATTTT # Right flank : CCCGTTGAGTTCAAAAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTGGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCGTTGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTCTTCGTTACCGGTAATTGCATACTCTGAATCAACCTTCCAATGCCCGGTACACACAATACCTACTTTGTGA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA //