Array 1 866598-862174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013670.1 Xanthomonas oryzae pv. oryzae strain PXO71 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 866597 31 100.0 35 ............................... TGAAGGTCTGACCCCTGTGGGTTGATCCCTGACCC 866531 31 100.0 35 ............................... CCAGCAGCCCTGGCTGAAATTGCAAAGCTGAGCAA 866465 31 100.0 37 ............................... GTCTACAATGCCGGTATTGGCAACTTCAGGAGCAGCA 866397 31 100.0 34 ............................... ATGAGCGCGCATGCGCAGATCAGCAAGCAATGCA 866332 31 100.0 34 ............................... TGTGGATTTATGGGCGCGCTGTGTGGTTGGGCAG 866267 31 100.0 36 ............................... CCGCCAGAGCGCCTTGCCCGCGAACTTGCCATGGTC 866200 31 100.0 34 ............................... CAGTGCCTCAAGCATCCTTGTATTGACTCTCCAA 866135 31 100.0 34 ............................... CCACTCACCCTAACCTGAATGTAACCATGTAGAT 866070 31 100.0 35 ............................... TTCGAAAGCAGGCTTACCAATGCCTGCCGTATTAC 866004 31 100.0 35 ............................... AGCTGATTACGCCCCCAGCTACCAGACATGCTGAC 865938 31 100.0 34 ............................... GAGTTTAACTGGTCGTCACCGAAGCAGCGGTCGG 865873 31 100.0 33 ............................... CTTAATCCCGGGGGTGTCTACGCCGCCTCGCCA 865809 31 100.0 34 ............................... CGGCGTGGATGACCACGTTCGTCGACCGTCGCGT 865744 31 100.0 35 ............................... AGAGGGATACTGCACAGTACCTTGGCATTTCAAGG 865678 31 100.0 36 ............................... TTTGCCATCGATGACCGCGCGCTTTACGGGCGCCGG 865611 31 100.0 34 ............................... ACATTGGATGTCACTACAGTTTTAGTCTTCTTCA 865546 31 100.0 34 ............................... AGGTCCTCCTCGAACGCGGAGAACGCCGACCGTT 865481 31 100.0 34 ............................... TGGCCGCAGTTGGAGTGAGAGCAAGGGATATCAC 865416 31 100.0 34 ............................... TTCGCATCAGGCACATCACCAGGGACATACACTC 865351 31 100.0 33 ............................... GTTTTGGACCTCAGGCAGCCTTGCATTCCTCGC 865287 31 100.0 34 ............................... CACTCTCGACAAGTGATTGGACGAATTCTATTTG 865222 31 100.0 35 ............................... ACATGCACCAGCCTTGGCTGTCTTGCTGTCCTTGA 865156 31 100.0 34 ............................... CCGACTTCGCAGATGCCGCCCGGATCACCTACAA 865091 31 100.0 35 ............................... ACCTCGATCGCGAAGCGCGCGGCATCGATGATCTG 865025 31 100.0 34 ............................... TACAACAGCGAGGCGCAGGAAGAGGATGGCGCGA 864960 31 100.0 34 ............................... ATCAACGCCGCAAGACAGATTCAGCGCACCGCTT 864895 31 100.0 34 ............................... TGCGTATACTGGACTGCCAATTGAAAAAGTAAGG 864830 31 100.0 35 ............................... ATGGCAATGCGGAAAGCACATGGTAACACTGCCAC 864764 31 100.0 33 ............................... GACGTAGGCGCCCGAAGCAGTCGACAGACCGAC 864700 31 100.0 35 ............................... CGGCTCCGATCTGGACCTATTGACGATTATGGAAG 864634 31 100.0 35 ............................... GGACAAGGCTTTGACAAGCAAGGCGGTTGCTGGCG 864568 31 100.0 34 ............................... TTACCGATCATGACAGTCTGACCCGCGACCGCCG 864503 31 100.0 35 ............................... GCTCAGCCGAAAGGGTTGTCCGTGCCGGCCGCCGA 864437 31 100.0 34 ............................... GCTCAATTGCCGGGTCGTACTCTTCGCTGTACCC 864372 31 100.0 36 ............................... CCCAGCCCCTCCCTTATAATCAGGCGAACGAGCCGT 864305 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 864240 31 100.0 34 ............................... CTTGACCTTCAAACCACGGATCAGGCGGTTGTTC 864175 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 864110 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 864045 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 863980 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 863915 31 100.0 36 ............................... CGCCGCGTTCGCGCCGCAGACCGTAAGCAGTTGGCG 863848 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 863782 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 863716 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 863649 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 863585 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 863520 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 863454 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 863389 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 863322 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 863257 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 863190 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 863124 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 863057 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 862991 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 862925 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 862860 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 862795 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 862729 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 862663 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 862599 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 862532 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 862467 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 862401 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 862336 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 862269 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 862204 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 68 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //