Array 1 584831-587465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIC01000007.1 Pseudoalteromonas luteoviolacea strain HI1 scaffold5_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 584831 28 100.0 32 ............................ TTTAAAACTCGGTCGTCATTGCTTGCCTTAGA 584891 28 100.0 32 ............................ ATTAAGATGCGTTAGCAAGTCGTGAATATCAA 584951 28 100.0 32 ............................ GACTTTAGAGCACGCTTTGATAAAACTGTTTC 585011 28 100.0 32 ............................ TGAAAAAAGTCGAGTCAAAAACCAAATAGCAC 585071 28 100.0 32 ............................ ACCACCATCGCCGCCCCCATTCCCGCCGTCTG 585131 28 100.0 32 ............................ GTTATACAATTTCTTCTATAGAAGTCTTGAGA 585191 28 100.0 32 ............................ TTTTTTATATGAGCCAACCAAGCGACCGCTCC 585251 28 100.0 32 ............................ GATGATGTTTAAATTGAGTTCGCCTTCAAATA 585311 28 100.0 32 ............................ AAATACGGTGACCGCCCAGCCAATCGAATTTT 585371 28 100.0 32 ............................ ATTACAAGCTTCTATAGGGTCAACATCCCATA 585431 28 100.0 32 ............................ AAACTTGTCAAAACCCCTCATATTCGCATACA 585491 28 100.0 32 ............................ TAATAACTTTGGAGGACTTCTGGCAAGCTTCC 585551 28 100.0 32 ............................ TTTATTGTATCTAGAAAATCAAAACTTTTAGC 585611 28 100.0 32 ............................ TCCTACTAAATCATTCCACCACCCTTTAAAAA 585671 28 100.0 32 ............................ CTCAAAAAAAGCTGGTCACCCAGTCACCCCTG 585731 28 100.0 32 ............................ ATCAAATCATAGAGAGAACGCACGCTAGGCCA 585791 28 100.0 32 ............................ TTCACCACTATCGCAATTCTTAAACTTAACTA 585851 28 100.0 32 ............................ ACAATCAAAAAACCCAGACGTTGAAAAGGCCA 585911 28 100.0 32 ............................ TTCACCAGAGATTTGGATGTAACACGTCTCAC 585971 28 100.0 32 ............................ TGAAAAATACATAACTGGAAAATCTTTGGATA 586031 28 100.0 32 ............................ GATCGCAAGAAACGTTAAGTCACTGGAATGTT 586091 28 100.0 32 ............................ CGAATATATAAGCGCAACTCCCGTAGATGGTG 586151 28 100.0 32 ............................ TATCGAATTCCGTATTTCTCATGATGACCACA 586211 28 100.0 32 ............................ ATGTACTTGCGCGCTCGGCTGCATCTGCGGGT 586271 28 100.0 32 ............................ TGTAGCAGTAAAGCAACTCTTTTTTTCTTATC 586331 28 100.0 32 ............................ TGTAGCAGTAAAGCAACTCTTTTTTTCTTATC 586391 28 100.0 32 ............................ GCAACAGTTAGACGTTCTAGCTGTGTTAACTC 586451 28 100.0 32 ............................ AGTAATTAAAATTGATAAGGACTCAGTAAAAG 586511 28 96.4 32 ............G............... AATTGACCCCACCCCCCCTGTGTCACTGATAT 586571 28 100.0 32 ............................ ATATGTGACCTCGTTATAATCTGACGCAGTGC 586631 28 100.0 32 ............................ GTTCATCTAATTATGAGCTGTACGCAGACCTC 586691 28 100.0 32 ............................ TTTTTGCGCCGGGATAGTCTTCAGGTGGCTTT 586751 28 96.4 32 .................T.......... TAGAGCAGCATTAATCTCATCAGACGTGGCGT 586811 28 96.4 32 .................T.......... CCACGTGATAAAGGCTTTCACGGTTATCAAAA 586871 28 100.0 32 ............................ AATTCAAAAATGCTCAAGTGCGGCTGGATAAT 586931 28 100.0 32 ............................ AATTCAAAAATGCTCAAGTGCGGCTGGATAAT 586991 28 100.0 32 ............................ GGTAATGTATTTTTCGGGCGTCAACAAGCCTA 587051 28 96.4 32 ...A........................ TCACAGGTTGCTCAAATCATTGGTGTTCCGAG 587111 28 100.0 32 ............................ TGACAACGCACTACACACTGGCTCACATACCT 587171 28 96.4 32 .....................G...... CATACGTTGTACATTGCAGCTTGTAGTTGCTG 587231 28 100.0 32 ............................ TCAGGCACTGGACTTCTGCCAGATTCCCAATA 587291 28 85.7 119 ............G............GTG ATGAGTGACCGAAACGAAGTTTCACAGCGCAAGGGGTGAGTCGCTTAGAATAAGGTCATGGATGAGCGATGTAACCCAGCTCCATGGATGGATTTCAGCTCCGTGTAGGAAGTATTTCG 587438 28 82.1 0 .......A.....T........A.T.T. | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 43 28 98.8 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAACCATGAAAAAAGTACTACTCACTGCGATTAGCTGTTTAGGAATGAGTGCAGCTGCTATTGCAGTCGATACACAATCGACCACTGTAAATCAAACTTTAACAGTGGATGGTGTGACTTCTGCTACTTATCCAGCTCAGCCTAATGTGTTAGCGTTGTTGACGCCATCAAATGCGTGTGAGGCTCGATGTCAAAGTGACTATAATGCCTGTGTTAAGTGGGCACCACCTTGGACAAACTGTAATGATTTTATTAGACGTTGCTTGAACAACTGCGCAAATAAATAAAGTTAAACCTTGTTGTTAAATAATAGGTGATATGAAAGGCCGGTAAAGCGGCCTTTTTGGTGGGTGCAAAAATACCAAAATACCTTTTTATTTTTGTTTAGTATCATAATATCTAAAATCAATGAGTTACAAACCACCTAAAAAACATGGTGTTTTTTGAATTATTTAGTTAGGTGCTTGTATTCACATGTTTTTGTGTTAAAAACTCATA # Right flank : ATTCGTGATGAATTGTTAGGTTCAACGATAAAAAATTGGATCCTGATTTTGATCAGGATGACAGGGAGTGGGAGGTATCGTACAGGCAGTCTTGGTGGTGCTTATCCACAAGTCTACATATTCTCCCCCCGTCATTCCGAGCTTGCCTCGGAAACCATTGGTTTTTTCAATGAGAGGCTATAAATAAAACCTGTAAACACAATTTCCCTGTTAACCGAGCATCATGGAAATCGAGAACGATTCTCACTGATAGGTTTGTGAAAAATGGTATTTATTACGGTGAATACAGCGAGTAATAAAACATACAACCAATTGTGATGAATAGGTACCACCTGTTTGAGGATGTGAAGATAGAACCACGAGTGAGTATCATATCAATTAAGTGATCAATTCTATCCATTGGTAGTCTATCCATAGGTTACTTAACTTATTTGTTCAGTTTATACGATTTAATTTAGCAGATAACAGCTGTTCAATGAATTAGATTAAAACAGACTGTG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 595682-597930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIC01000007.1 Pseudoalteromonas luteoviolacea strain HI1 scaffold5_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 595682 28 100.0 32 ............................ TTATAATCAACACTAAACTGAGGAACGGGTAT 595742 28 100.0 32 ............................ TTAATACATTACTCAAAGCAATTCAGTTTGCT 595802 28 100.0 32 ............................ TGGACTTTCTTTTGGACCCGATGTTTAAGCTC 595862 28 100.0 32 ............................ TTAAGTTACTTGCAAATATATCTGATGACCGA 595922 28 100.0 32 ............................ ATTCGGCGTTAGTACTTGCATAGTAGTCAGAG 595982 28 100.0 32 ............................ TAAAACTTTGAGAGTGGATATTTATTTTTGGC 596042 28 100.0 32 ............................ TAACTAATTGAAGCCATCCGACATTTACATCT 596102 28 100.0 32 ............................ TACGGCTTCAATAACGAGCATTGAAAGAGTAG 596162 28 100.0 32 ............................ TCGATAACTTATGACGTTGCCTTAGAGTTAAA 596222 28 100.0 32 ............................ TCTCTCAAGCCGAAGCATGACGTTGATGTTAA 596282 28 100.0 32 ............................ AGAATAAAGACGGTATGGCAACCAAGAGACAA 596342 28 100.0 32 ............................ AACAAACTCAACTTTTCCTCCCAACTCGACTA 596402 28 100.0 32 ............................ ATTTATTTAGACCTCCCTATCAACACAATACC 596462 28 100.0 32 ............................ TTGAACCTTTACCAAAGTAAGCTGTTGTATCG 596522 28 100.0 32 ............................ TCGAATGTTACAGCGCTTAGCTATTCCTACTA 596582 28 100.0 32 ............................ TGTAAGTAATTTTGCTGGACTTGCTTTGAGTT 596642 28 100.0 33 ............................ CATATTCATAGGGGAAAGATAAATATTCCCACC 596703 28 100.0 32 ............................ CCAATAGAAGCGCACCACCACCGACCAGCACT 596763 28 100.0 32 ............................ GTTAGTAGTGCTAGATTTCGCTTCCTGCCCGC 596823 28 100.0 32 ............................ TGAAACTGCTCATAATGCTGTCTAAGTGCAAA 596883 28 100.0 32 ............................ AGTTAATATAATTATTATTAAATCCATTATAG 596943 28 100.0 32 ............................ TTTCCCATAGTGGAATATCAATGTCCAAGAAA 597003 28 100.0 32 ............................ TTGTTTTCTGATTCCCAATATCTAGCAGTGTG 597063 28 100.0 32 ............................ TGGAGACTTTTGCTCTTGGGGTGCGGGGGTGT 597123 28 100.0 32 ............................ AAGAAACGACGAACGAATCTTCCCATACAATG 597183 28 100.0 32 ............................ AATAAAAGGGTTGCCTGTCGGCACATGTATCA 597243 28 100.0 32 ............................ TTTTGCACCTTCCATTTCAGCCATCCAGAAAA 597303 28 96.4 32 .........T.................. ATAATAAAAAGCGCAAGGGTAATGCTTAACTA 597363 28 100.0 32 ............................ GTTAGCTGTTATCGACATTAAGAAATCTTCTG 597423 28 100.0 32 ............................ GAGCACTTTTCTAGTCATCTTGATCTCCTTAT 597483 28 100.0 32 ............................ TTTATCGGCAGAGCTGCTGGAGACTCGATGAA 597543 28 100.0 32 ............................ ACGGAAGGAAGTCTTTTTTGCTTAACATCTTT 597603 28 100.0 32 ............................ TCTAGCACTTTTACACCGAACTTTTTCCTGAC 597663 28 100.0 32 ............................ TAGCATAATATCAACGGCAGTTAATATGGTGG 597723 28 96.4 32 ........T................... ATAAGTGGACTTATTCTTTGACGTTCGGACTA 597783 28 100.0 32 ............................ AGAACCCATTGGGAAACGAAGGATAACAATAT 597843 28 100.0 32 ............................ TAGATGACCCCTAACAGTTGGGGTCACTAGAA 597903 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.8 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : TGGGTTGGTGGGTTACTGCGATGTGAGTGATATTCAAGCTGTACCAAGTGGGTGTGAATACCGAACAGTTTCTCGAATTCAAAGCACGATGTCTCACTCAAAATTGAAACGCCTAATTAAGCGAGGCTCTATTAGTGATGAACAGGTGAAAAGCTATAAAGCCAAAATGTTTACTAAAGGGTTCGATAATCCATATTTTGAACTTGAGAGTGGTTCAAATGGGCATAAGCATCGTCGTTATCTGCAATTTAGTGAAATCAAAAAATCACCTGTGCAAGGCTGCTTTGATCAATTCGGTTTAAGTAAATCAGCTACAGTTCCGTGGTTTTAAAAAAACAGTATGTAAGAAAGTGATAAAGGGTAATTTTACCCTTTATTTTTTGCTCTTTAAAAATGTGTATAAAATACAGCAGGTTGCAATATGCTATTTTAAACAAGGTAAAAATAGGTTTTTTGCCTTAATAGGTTGTTGCAACTTATCTTTTTTCATTTATTCTATA # Right flank : ATCAAATGGGGTGATAGAATTTCATTTACTTTGCTTCACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 598546-599953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWIC01000007.1 Pseudoalteromonas luteoviolacea strain HI1 scaffold5_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 598546 28 100.0 32 ............................ TAAAACCGCTTGTTTACTCATTCCGACTCCGT 598606 28 100.0 32 ............................ AAATTAATGCTACATTCCTCTCGGCTGTTTCT 598666 28 100.0 32 ............................ GCTGGACATCTGCCAATATACGGATATATTTT 598726 28 100.0 32 ............................ TAGAATAATAATCAAAGCTGAAATAGTGGCGA 598786 28 100.0 32 ............................ TATGTTTTGGGTTCCTGAAGAACAGGTGTTCA 598846 28 100.0 32 ............................ TCTACATAATTTAAGGACTGAAAATGACACAT 598906 28 100.0 32 ............................ AAAAGCTTTTGTCTAGTTTGTCCAGCCATTAA 598966 28 100.0 32 ............................ TAGATCAGCATTGACCTTGGAAAGTTCTCTAA 599026 28 100.0 32 ............................ TTCGATTTTTAACCACTCTTGGGGGATTTCTA 599086 28 100.0 32 ............................ ATGTAAGCTTGGCTGTCACCGTTCATCATTAC 599146 28 100.0 32 ............................ TTGGAGCGCAATGATTATCTGGGGTACATAAA 599206 28 100.0 32 ............................ ATAAACGTCAGGGTAATACTGTCGTCTTTTGG 599266 28 100.0 32 ............................ TCCAAAGAATGATATATAGAGTTCACAAGTTC 599326 28 100.0 32 ............................ TATGGGGTAATTTTGACATCCTTGTATATCAA 599386 28 100.0 32 ............................ TGTAATAGCTCTTGCTCAAGTTAATAGGTCAT 599446 28 100.0 32 ............................ GATATTGTTTCTATTTCAACTTGCCTGATTGA 599506 28 96.4 32 ........A................... TTGATTCAACTTTACCATCAACAACCCTGTGA 599566 28 100.0 32 ............................ TGAAATTACATTAACGGTCTGCCCGTTAGTCA 599626 28 100.0 32 ............................ ATCATAAACATACTCTCGATACGTATCGAAAA 599686 28 100.0 32 ............................ TTGGTCTCAGCATCATCATCAGCGCAAATAAC 599746 28 100.0 32 ............................ ATGAACTTCTTGAACTCGATATCATTTGAGAA 599806 28 100.0 32 ............................ TTTTTTTTGGAGCAAAATTATGTATACACCAC 599866 28 100.0 32 ............................ GAGATTGATAACTCGGCTGATGCATTGGCTGC 599926 28 75.0 0 ..........ACG..A.........GTG | ========== ====== ====== ====== ============================ ================================ ================== 24 28 98.8 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCAGCTTAGAAAGCTATAACAGTACCTTCAACGAACTGGCTTCC # Right flank : GATGAGTGACCGAAACAAAGTTTCGCAACGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCACACTCTATGGATGGATTTCAGCTCCGTGTTGGAAATATTTCGCTTCACTATCGCGCCGCAGGCCTATGTATTCTTGATGGATTGTTGAGTCTAACGAGGAACTGATTGTGCAACGCAGTAAAAATGGATCCTGATGTTCATCAGGATGACGAGGGTGAAGTCGGTGTGTTGATTTATCATAAGTGGCGCGTATTAATCGTCGTTATAGCTGTGTTTTCCTCTCCAACCAACAAACGAATCACATGCACAGAACCCAAAATCGGATCCTGATATTCATCAGGATGACTAGGGTGAGGTCAGTGTGTTGATTTGACATAATTAGCCCATTTAATTTTGTGTCTACTGAAGAACTATTTTCTGTTGCATTAAAAATGGATCCTGATGTTCATCAGGATGACGGGGGTGAGGTCTGTGTGTTGATTTGACTTCAATGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //