Array 1 985612-986127 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022213.1 Pseudomonas otitidis strain WP8-S17-CRE-03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 985612 29 100.0 32 ............................. ACGTTGATACCTCCGACGTCGCGCGCTTCCCC 985673 29 100.0 32 ............................. TATGCCGGCGCTTACTTGCCATCCACCGACTG 985734 29 100.0 32 ............................. CTGCTCGTGTGCGGTGGCCGCGACTATGCGGA 985795 29 100.0 32 ............................. CGGCTCATGGGCATCCGCCCGGATGGCGGCTA 985856 29 93.1 32 ..............T...........T.. ATCATCGCCCGGATGCGCTACAACGTGGACGG 985917 28 93.1 32 .............T.-............. TCTTCTGCGCAAATGGCAGGGCTGGTCAACGA 985977 29 93.1 32 ..............T.C............ CGGGCCGGCTGGTCGGTGGAGGCGTGGGACCA 986038 29 93.1 32 .............AT.............. TGGGGCGACGAGGTCCACATGGCGCTGGAGAA 986099 29 86.2 0 ............T.C.......C.....C | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGTTCCCCACGGGGGTGGGGATGAACCG # Left flank : GAAGAGACCATCCTCCCGCGCCTGTACCGCGAAGCCCCGGTCAACTCCATCTGGGAAGGCTCCGGCAACGTCCAGTGCCTGGACGTCCTCCGCGCCCTGTCCAAGGAGCCCGGCGTGCTCGACGCCCTGTTCAGCGAACTGGGCGACGGCCACGGCGACGCCCGCCTCGCCGCGCAGATCAACAACCTCAAGGCCGCCTTCCACGACACCGCCGACATCCAGTACCGCGCCCGCCAGCTCACCGAAGACGTCGCCGTCGCCCTCCAGGCCAAGCTCCTGCTGGAGGCCGGCAACGCCACCGTCTCCGACGCCTTCATCGCCAGCCGCCTGGGCGGCAGCGGCCGGGTCTACGGCACCCTCCCGCGCGGCATCGACGTCGAAGCCCTGGTCGCCCGCAGCACCCCGCACCTGGCCTGACGCCACGCTGGCAACAGGGGAAAACAGCCGGTAGATTTTCCGCTGCCGGCTTTTCCCTCTGGGATCAGCGGGTTACGGGAAGG # Right flank : CATCCCAAACCGGAACGGCCAGGCCCCACTGCGCGGCCTGCGTAGGATGGGGTGAGCTTGGCGAACCCCATCACCCGGCCGCGCCCCGGCCCTAGGCCGCCCGCTCCGCCAGCCGGCGCTGGCCGGTCAGCGCCGTGGCCACGAACAGCGCTGCCGCCAGGCTCAGCGCCAGGGGCAGGCCGTTGGGGCCGGTGCCCATCAGCGCACCGCTCAGCAGCGGCCCCACCAGGCTGCCGATGCCCCACAACATGCCCACGCAGGCGTTGGCCGTGACCAGGTCCTGCCCGCTGAAGCGCTCGCCGATGCGCACCAGCGCCAGGGTGTAGACGCCCCCCGCCACCGCCCCCAACAGCACCAGCGCCGGCCACAGCAGCGTGGACCGGGTGATCAGCCAGGGCAGCGCCATGCCGATGCCCAGCGCCGCCATCCCGCAGACCAGGTGCAGGCGGCCGCGCTCGGTGCGGTCCGACAGCCAGCCCAGCGGCACCTGGCAAACCATG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGGGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3732376-3731614 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022213.1 Pseudomonas otitidis strain WP8-S17-CRE-03 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3732375 29 100.0 32 ............................. TCCTACGCCATCGGCACCCTCGCCGTCGTAGC 3732314 29 100.0 32 ............................. GCCGCCAACTCCTGGCTGAAGCGCGTGCAGCG 3732253 29 96.6 33 .............A............... AAACGAAAGCCCGGCTCGCTGATATCCAGCGGG 3732191 29 100.0 32 ............................. GAACTCGCGCCTGCCGCTGAGTACGTTCCGCC 3732130 29 100.0 32 ............................. GCGGCGATGTGGCAACGAAGGGCGAGCAGTTC 3732069 29 100.0 32 ............................. GGTCTCAAGGGACGCCAGGACACCGAGAACCA 3732008 29 96.6 32 ....................A........ TCGTTGGCGGCCTCGTGCCGGCGCCGGCCCGT 3731947 29 100.0 32 ............................. TTGTGGGGTACGGTCCACACGGCGAGCGGGAT 3731886 29 96.6 32 ............A................ GCCTGGGTGGTCGAGCTGGAGCGCCTGCTCAT 3731825 29 93.1 32 ........T....A............... ACCCGCCAGGCGGCGGCAGTATTGCGCGAGCT 3731764 29 100.0 32 ............................. CTGGGCGCCCTCGGGGCGTTCGCTACCGTGGC 3731703 29 93.1 32 ..............C..........G... TGCCCGCGTTGCCGGACACTCAACCGCCAGAA 3731642 29 82.8 0 ............CT...........TT.T | ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : TGGTGATCAAGGCCGGCTCCGTCACCTGGGAGGAAGGCGTCGACTACGACCTCACCGACGCCGGACTGCCCAAGATCAAGGCCGGCGGCAAGGCGCTCGCAGCCGGTACCGACATCACCGTCGACTACAGCCACGGTGCCCACGTCGTCATCCAGGGCCTGGTCAACTCCGGCCGCCGCTACCGCCACGTGTTCGTCGGGCTCAACGAGGCCGACACCGGGCGTCCGGTGGTGATCGAGTTGTACCGCGTGGTGCATTCGCCGGCCAGCCTGCAGATGATCTCCAACGAGTTCGGCGGCATGGACTTCACCGCCGACCTGGAGAAGGACGTCACCAAGACGGAGCAGGGCGTCTCGCAGTACCTGGTGGTGAAGTACGTCGACTGACCAGCCCGGCAGGGCCGCGAAAAGCTGCCCTGCCGCCACACCGAAACGGGCTGAAAGGTTGGTGGGAAAAATAGCGGGGAATTTTCCTTTTCACGGCAACGGGTTAGATTTGGT # Right flank : TACATAACATTCAACCGACCTTGCGGCCGTATGTGTGCCCCACGGGTGGGGCACAGCGCATGCAACGGCTACTCGGCATCAAGCGGCGTAGTTGCGAGGCGTTTGACGTCGCCGATAAATGCATCAAACGCTCGCTCCAGCGACTTGAAGGAACGTGTTTCCGACCCCTGGCAACTGAGCTTCCAGGGTTTGCTACTGGAGTCCACTGTTACTTCAACCCAGGTTTTAGTTTCCCAATCCAACTCCCGGCGCGTGACAACCGGTGAAAAGCACAGCGCCAAATCAGGAGTTTTGCGGGGCTTGCCGTTCTTGAACAGTCGGCTGAGTTCAACGGAGTCGTCCTCGGCTTTTACATGCCACCCGGCGCGGGTGATATCGGGGAGATGCAGGGCGAGGTGCTGCTGGAGCGTCCAGGCGCTGCGGTCCTCCGGAGGCTGGTGCGGGGTGATGGGTTGGCTGGTGGCCAGCTCGATTTTCCCGATCTTGAATGTTTTCCTGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //