Array 1 112725-111170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRYC010000002.1 Escherichia coli strain KCJ2K2372 NODE_2_length_479372_cov_10.776073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112724 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 112663 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 112602 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 112541 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 112480 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 112419 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 112358 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 112297 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 112236 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 112175 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 112114 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 112053 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 111992 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 111931 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 111870 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 111809 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 111747 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 111686 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 111625 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 111564 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 111503 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 111442 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 111381 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 111320 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 111259 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 111198 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139367-138423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRYC010000002.1 Escherichia coli strain KCJ2K2372 NODE_2_length_479372_cov_10.776073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 139366 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 139305 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 139244 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 139183 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 139122 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 139061 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 139000 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 138939 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 138878 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 138817 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 138756 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 138695 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 138634 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 138573 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 138512 29 93.1 32 .A.C......................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 138451 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //