Array 1 50357-46426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEF010000005.1 Acinetobacter nosocomialis strain AC15 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50356 29 96.6 31 ............................C CTAAAATGCTATTCACCTCGAGCTGTTATTG 50296 29 96.6 31 ............................A CAAACGCACAAAAATGAGATAGTTCGTCTTA 50236 29 96.6 31 ............................A TAAGCCTTAGGACGAATAGATGCACCATCAT 50176 29 96.6 31 ............................A GTAGAAAGCGTCCATCGCATTGTCAAACTTT 50116 29 100.0 31 ............................. AATCGTGGCTGGTCAATGACTCGCGACAAAC 50056 29 100.0 31 ............................. GATACGAACAAGCCGTATGAATGGGTTGATT 49996 29 100.0 31 ............................. GTGGCATTTGGAACAGGCTTAAAAATATAAG 49936 29 100.0 31 ............................. AATGGTGCAGTCCTAATTTATGATGAATGTC 49876 29 96.6 31 ............................A ATTAATTGGTCGACGCCTTTTGGAACTATTA 49816 29 96.6 31 ............................A ATTCGGATCTGATTAACTGGACTGTCGGTCT 49756 29 96.6 31 ............................A TTAAAATCCACTCACGCTCACACCCAAGCAG 49696 29 100.0 31 ............................. ACCACTAAAACTAAATTCATCAATTTCAATT 49636 29 96.6 31 ............................A ACCACTTCCATTTCTTGGCCTAGCCTTTCTA 49576 29 96.6 31 ............................C CAGGGTGTCCAGTGTTCCATGCTTTTAATAA 49516 29 100.0 31 ............................. TGATGTGTGTCTTGGTGCTCATCCTGTTATC 49456 29 96.6 31 ............................G AATCCATTTTTTCCGCCAGAGTCTCCACCAC 49396 29 100.0 31 ............................. GCAATGTTTTTGGTGTACATTGTACTTCCAT 49336 29 96.6 31 ............................A ACGACGCTCAGGATGGAATCTAAACTCCTGC 49276 29 100.0 31 ............................. TGATCGTTACCAATCAAATCTGATTCAGAGC 49216 29 96.6 31 ............................A AAACCCTTCATCAACTCTATTGTTTAAAGCC 49156 29 100.0 31 ............................. TTAACAACAAGAGGACGGCCACGCTCATTGA 49096 29 100.0 31 ............................. ATTGTCAAAAGAGCGGGTGCTTTGTGTCCTG 49036 29 96.6 31 ............................A TTAGTCATGGTTGAATTTGTGGATCACGTGC 48976 29 96.6 31 ............................A TCTTATCCCGCTAAATCCCACAATTATCTCA 48916 29 100.0 31 ............................. GCCGCAACAAAACCCTCTGTATCGCCTTTTT 48856 29 100.0 31 ............................. TTTGCGGCTTCACGTTGTGCACGTTCAGATC 48796 29 96.6 31 ............................G TTGTCTTGATTCTGAAGACGTCGCTCTTCTT 48736 29 96.6 31 ............................A TGACACTTAATGATGGTGAGTTGGCTTCAAA 48676 29 100.0 31 ............................. TCTGGCCAGTCTCGGTTGGTCCCCAGTTATA 48616 29 89.7 31 ...AC.......................C CGTTCTTCTCGCCGATATACGTCAATATTTG 48556 29 93.1 31 ...AC........................ AAAGGGAAAATTGTTTTTCAGCTTCGGTACC 48496 29 93.1 31 ...AC........................ CAATAATTGCACGCAAAAGTGCATCATTATT 48436 29 86.2 31 ...AC.......CC............... TCCCAGCTAAAATAATTCTGCGTTAGTTTGT 48376 29 79.3 31 ...AC.......CC......C.......A CGGAAGACCGCCACCAACAGCCGAAGCAGCA 48316 29 89.7 31 ...GC.......G................ GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 48256 29 89.7 31 ...GC.......................G CTAATCAAAAATTACGCCGTGCTACTGGTGA 48196 29 79.3 31 ...GC......TCC..............A CTTCAATTGATACTGGCTTTGTAGTTTTAAT 48136 29 86.2 31 T..GC.......G................ TAAATATAAAAATGGGTGTGCCACTTTTTCA 48076 29 89.7 31 ..C.G.......................C TAAAGGCTGGACACGAGGGGCATAACTATGT 48016 29 82.8 31 ...AC.......CC..............A CCAGCTCGCAGCCAACCTGAAGCTGGAGCTT 47956 29 86.2 31 ...GC.......G...............A TGTAGTCCGCAATCGAACCCATAACCGCTTT 47896 29 89.7 31 ....G.......CC............... GATTGCTCAGGTAAAAATACTGTTTCAGAGC 47836 29 89.7 31 ....G.......CC............... AGCACATCACGAGCAACCGCTTGTGTAATGT 47776 29 89.7 31 ....G.......CC............... ATTTGAATTAATTAAGTTTCAACGTTCTAAC 47716 29 86.2 31 ...GC.......G...............A ACTATTACGACAACATCAACCAGCAGCAAGA 47656 29 89.7 31 ...GC.......................A CAACTTTTTAAATTTGAATTTATTTTAGCTC 47596 29 93.1 31 ....G.......................A TAATGGTCATTTTGGTGATTGAATTATTAAT 47536 29 82.8 31 A..TG.......G...............A CATCTGTATGCAGATTTTGCTGCGTCCTTAC 47476 29 89.7 31 ...AC.......................A ATTACTCCGCCTGATCCTAGTGATCCTCCGG 47416 29 93.1 31 ...AC........................ TAAAGCGTATATATAAGCGTTTTGATAACCC 47356 29 96.6 31 ............................G GGTGTGAATCAATGCTGGATCCACTTAGCAA 47296 29 96.6 31 ............................A TTTTCGGTAAACGGCGCTGCTAACGCCGTTC 47236 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 47176 29 96.6 31 ............................G CTTTGGTACGGTTATTTGTGCAAAGGATGAA 47116 29 100.0 31 ............................. GTATCATTTCACGTTCAGGAATATACTCAAT 47056 29 86.2 31 ...AC.......CC............... ATACTGGTCGTATTACGGATTTCCGAAGACC 46996 29 89.7 31 ....G........C..............A CTTCGACAAAACGCTCAAAACCTAAGGGCTT 46936 29 79.3 31 ...GC....T..CC..............A GCTGCCTTCTTTTAGCATTGCATCATAAAGA 46876 29 89.7 31 ...GC.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 46816 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 46756 29 89.7 31 ....G........C..............A TTAAAACATTTCCATATGAGCCTTCCTCATT 46696 29 86.2 33 ....A......TCC............... TCGGATCAGTCCAGTCATCACATCCTCGTCAAT 46634 29 89.7 31 T..A........G................ ATCATTGCGCGACAGAACGCATCAATTAATG 46574 29 82.8 31 ...GC.......CC..............A GATCTATGCAAGATTTATTGGTCTACATTAG 46514 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATAGTTACAGTCAG 46455 29 86.2 0 .G..G...................AT... | C [46450] ========== ====== ====== ====== ============================= ================================= ================== 66 29 92.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGATACTATTGCTGATATAGCCAACAGCTACCTTGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAGTTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGCCTAGTTTTTGACCTAGCGGACCTAGTGAAAGATGCTTTTGTGATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATTAAATAAAATCATATATTTAATCTAAGTACCTCTTAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGGTTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACAC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [48-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55446-56432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEF010000005.1 Acinetobacter nosocomialis strain AC15 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55446 28 100.0 32 ............................ TAAGTTATTGATTTAATTGACATATTATACAT 55506 28 96.4 32 T........................... ATCAGTTCGCCCAGTACCACCGCAAGTCTTAG 55566 28 100.0 32 ............................ TGTTCACCCTCAAGTTGTTTTTCATAACGTAC 55626 28 100.0 32 ............................ AGAACCAACTTCAACTACAGCTGCAACAACAA 55686 28 100.0 32 ............................ ACTTACAAACACCGCAGCAGGCTCTTGAATTT 55746 28 100.0 32 ............................ TTGCTAATGTTCTTAATATTTTTTAACTCTGA 55806 28 100.0 32 ............................ TAATCTGTCCGCAATTTCGCCATTGTTCTTAG 55866 28 100.0 32 ............................ ATTCAAAACGTTCAAACTTCTCAACTGCTACT 55926 28 100.0 32 ............................ GACATAAAGGGTTATTTCAAGCGCATACAGAT 55986 28 100.0 32 ............................ AATCTCAGGACACAAAGCACCAGCTCTTTTGA 56046 28 100.0 32 ............................ AGCATCCATTGTGCTGCCGTATCGATCCAAGA 56106 28 100.0 32 ............................ ACCCCAATTGAACGAATCATGTTTTTGTTAGC 56166 28 100.0 32 ............................ ACTGGGTGAGCCAATATCCCTACTACGAAGAA 56226 28 100.0 32 ............................ TGTATGATTACGAGCTTTCCACGCAATAGTTG 56286 28 100.0 31 ............................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 56345 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [56349] 56406 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGATATAAGGTAAATCAAGTGCTTGTTGTTTACTTAAACGGATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCACAAATTTAGCCTAAGACGATTAGGTTATATTTTTAGGAAATTAGAAAAATTAATATAATTCAATAAATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //