Array 1 148850-150441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSTF010000012.1 Providencia rettgeri strain PRV00006 PRV00006_contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148850 28 100.0 33 ............................ AGGATAGGGCACAACGAATGGCACAGGCTTTAT 148911 28 100.0 32 ............................ AAAGCGATTAAAAGAGCGTGAGGGTGTTTCAT 148971 28 100.0 33 ............................ CGGATAAAATAGAACAACCGGAGGCCAAGTGAA 149032 28 100.0 33 ............................ ACCGCGCAAACCCGCTACGCTAAACGCTTGGCA 149093 28 100.0 32 ............................ GAAATATTGAGCGTCGAGGATCCGCCAGCTGA 149153 28 100.0 32 ............................ CGCCCCTATACAAACTGTCGCAACAACCATTG 149213 28 100.0 32 ............................ TTTGCCATCCATCCGTTATTTAATGGTTTCAA 149273 28 100.0 32 ............................ TCATAGCAACACTATAACTTGGTGGCTGTATT 149333 28 100.0 32 ............................ TGCCCGACTGATAATAATGTTTGCTGTTCCAT 149393 28 100.0 32 ............................ TACACGTCAAAGGCTGTGCGAACGACGCAAAG 149453 28 100.0 32 ............................ ATTTATTTTCGTTTCGCCGAGGTATTTCACAC 149513 28 100.0 32 ............................ CACTATCGACACGGAAGTAAAGGGACGAAAAA 149573 28 100.0 32 ............................ AAATGGCAATAATTTTGGTAGTAAAAACTACG 149633 28 100.0 32 ............................ AATACGATGAGCAGGTCACGAATACTTTCCGC 149693 28 100.0 33 ............................ TTATCTTATCGACTGCAACATGGCAATCTAGCA 149754 28 100.0 32 ............................ TGAATGCCATAGCGATAAGCCGTGGTTGCCAT 149814 28 100.0 32 ............................ TGAATGCCATAGCGATAAGCCGTGGTTGCCAT 149874 28 100.0 32 ............................ GTTTCGAACAAACAAAGTTAGAAATAGAGCAG 149934 28 100.0 32 ............................ CAAAGAATGCACATCTTGTCACTACATGAAAC 149994 28 100.0 32 ............................ TAAAACCGCTTGGCTGGCTAACTTTCCGACCT 150054 28 100.0 32 ............................ TTCCCTATGTGATTTAACCAAAGGATATAACC 150114 28 100.0 32 ............................ CGCACAATCTCTATGCGTCAATTAAGTGTGTG 150174 28 100.0 32 ............................ AGTACCCTCGATTGTTATTGACGTCGATATAA 150234 28 100.0 32 ............................ TGCATTATATGCGCCAACGCCTTTCCAGATAT 150294 28 100.0 32 ............................ ACTCCCCCTTAAGGTCGGTAAAAGCTTGTTCA 150354 28 100.0 32 ............................ AGATGCAAGCGGTAATAGCCGTAAATCGGTGA 150414 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCTGATACGCGCTCGATTCAAAATGCGGCCCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATACTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTTATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTAATCTATTTTTGTTATA # Right flank : AGCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 159137-159346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSTF010000012.1 Providencia rettgeri strain PRV00006 PRV00006_contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 159137 28 100.0 32 ............................ TATCTTTATTTTGTGATTAACGATTATTCCGG 159197 28 100.0 32 ............................ TTAGACATAATGCCATCATCAATACCCTGTAA 159257 28 96.4 32 ..A......................... TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 159317 28 78.6 0 ......T...GT......A..AG..... | TA [159337] ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ATATTAAATCGATTCAGGCAGTACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGATTGTGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAAATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGCTTTTTGCTATTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTACCAATAAATAAAAGGGTATTTTCCAATAAATACCCTTAATTGATTGTTATCACTTATTTTTATTTTAAAGTGCATC # Right flank : ACTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAGGCAATTTGCATTACAGTGCAAATTATGATGAGGGAATATGTATACGGTAAAATATCATTCTGAGGCTGAAAAAGAAGCCAATGCACTACCTTTAAAACTCAAGGTGAAGTATGACCGTCTCATTAAAAAATTAGAGTTATCAGCTAATTACTTAAGAGAGCCAGATACTAAATCACTGGGTGATGGATTATTTGAAATAAGAACTATGGGAGGTGAAATAGCTAGGGGGCTATGGGTTTACCATAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCAGAGTTTTATTTAGCTAAAAAACGTTTATTGGAGCTACTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATTAGAACTGA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //