Array 1 965101-965431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYV010000001.1 Leptotrichia sp. oral taxon 417 strain F0703 HMT-417_F0703_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 965101 36 100.0 39 .................................... AATTGTTTTCAAAGAAGTTATTAAAAGTAATTGTTCTTC 965176 36 100.0 39 .................................... CTTTCTCGTTGTTGCTGTTTACTAATGTTACTGCTTCAA 965251 36 100.0 36 .................................... TTATTTCTTTTAATTCGTATCTTATTAAACTTAAAA 965323 36 88.9 37 ....G.A....C..........A............. TCAAATAGTTTTTGCAAATGTAAAGTTTTAATATCTG 965396 36 80.6 0 G...G.A...............A.......TA...T | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 93.9 38 ATAAAAGGAAATGATACTCTGAGAGGAGACGGAAAC # Left flank : TCCAAATTTATATAGTTCGATATTAATAAGGTGATGGTAAAATGGATGAATGGGATTTTTTAGATGAAGATTTTTGTCATGAATTTTTTGAAGATACCTTTACAGTTGTCGTAATTTATGATATTATAGACAACAAGAGAAGAGCTTTTCTTAAAAATTTTCTAAATTCTTACGGAAATAGAATACAAAGGTCTACTTTTGAGTGTCTATTAACTAGAGAAAAATGTGAAACACTTTTAAAAGAAATAGAAAAATTTGCAGAAGAAGGAGATTTAATAAGAATTTACAGGCTCAATCAGAATGTAAAAAAAGTAATTTATGGCGAATTAAATGAAATTGAAAACGAAGATTATTATTTTTTTAGTAATCGCCACGATACTTTAAAAATGGGGGTTAGAGTATATTTTTTATTGTTAAGAAAGAGAAATATAAAGATTTTTAGAATTCTCACGAAAATAATAAAATAATATATGATAAAATAAGGGGTTTGTTGAGGGAGG # Right flank : TTTTTTTAAATTGGCTTATTTTATGTTGTCATAAATTTATTAAAAAGAAAATTTTGAAAGGGAATGGAATATAAAATGTTTTTTTGATTAATTGTAAAGAAAAGAGATGGGTTATATTCAGGATAAAATTATTTTAAGACTATAAAATTAATCAAATAAAAAAAGAACTATAAATATAACAATATAGTTCTTTTATAATTTTAGAAGCATCAAAGACTAAATCTCCAAAAATTCCCTCTCAAACTCCTCCTCCGTAAGCACCCGAATTCCCAGTTTTTCAGCCTTTTCCAGCTTACTTCCAGCCTTTTCTCCAGCAATTAGAAAATCTAGATTTTTTGAAACTGCTGACAGATAATTTCCGCCTTTAGAAAGGATGATGTCTTTTATGTCGTTTCGTTTGTATTTTTGGAGTTTTCCAGTTGCAAGGAAATTTTTGCCTTTTATTGGGTTGTCGGCTATTTCTTTTAAATCGGATTCGTTAATGGCGAATTGTAAGCCGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAAAGGAAATGATACTCTGAGAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1085184-1087227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYV010000001.1 Leptotrichia sp. oral taxon 417 strain F0703 HMT-417_F0703_contig1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1085184 29 96.6 37 ...................C......... CAATTTCACTAGGAAAATCTTTTAAAATCTTTTTTAG 1085250 29 96.6 37 ...................C......... ATACTTTTAATATTGGTACTGTAAATAGCTCTATCGT 1085316 29 96.6 36 ...................C......... TAATATTTTACTGCAAAATTAAAAACACATTTCGCT 1085381 29 96.6 36 ...................C......... GATTCTGTCTTTCAGCTTGCTTTCCATATTTCTGAA 1085446 29 96.6 36 ...................C......... GCACTAATTCCAGTCATCAAATCCTTTTGAGTAGTC 1085511 29 96.6 36 ...................C......... ATTGGGGAATATTGACTTGGAAAATGGAATAATAAC 1085576 29 96.6 36 ...................C......... GCACTAATTCCAGTCATCAAATCCTTTTGAGTAGTC 1085641 29 100.0 35 ............................. AAAGCCTCACCGAAAAATCCAAAAACCGGACTTAA 1085705 29 100.0 36 ............................. TAAATATAAAGTGCAGACAGCTAGTTATATTTCAAA 1085770 29 100.0 36 ............................. CAACTTTTGTATAATTTTTTTGTAAATAAAAGATAA 1085835 29 100.0 36 ............................. ATTTATAAAACTATTAAAGAAAATAAAGAAAAATTA 1085900 29 100.0 35 ............................. GTTGAAGGTTCTGCCATTTTAAACAAATTTTTAAA 1085964 29 100.0 36 ............................. TTTATTAAAATACCGTGATGAGCCATCAAAAGAAAT 1086029 29 100.0 36 ............................. AAGTATATAAATTAAAAATTGAATTATAAAAAAGAT 1086094 29 100.0 36 ............................. ATTGTAACAATTACAAATAAGTCATCCCTATAAGTA 1086159 29 100.0 35 ............................. TCTGGAAGTATCCAACCTAATGTCTTTTTAATTTC 1086223 29 100.0 37 ............................. TGATGGGTCTGGAATAATGTAGTATGCACTCATAGAG 1086289 29 100.0 36 ............................. GAAGAAAACGGTAACGAAATTAAAAAGACATTAGGT 1086354 29 100.0 35 ............................. CTAACTTTCTTTTCAGTTTTTTTAGTCTGTTTTTT 1086418 29 100.0 36 ............................. GAATCAGTTTAGTTTTTAATTCTCTAATGCAAACTA 1086483 29 100.0 36 ............................. AAAAATGGCTCAACGAATGGCTTATGGAGTGTATAT 1086548 29 100.0 37 ............................. TATATCCAAAATAGGTATAAAATAGATAAGGAAGTGG 1086614 29 100.0 35 ............................. AAGCCTTTCCAGAATTAGGTACAAAACTGTTTACT 1086678 29 100.0 36 ............................. TTAACTCTCCCCGAATAAGGGAGAGTCTTTTTTTTT 1086743 29 100.0 36 ............................. ACATGCTAAGAAAAACTTTAACACAAATGAAAGAAT 1086808 29 100.0 36 ............................. CAATGTATTTGGTAAAAAAAGTGCAGAAGCATTAAA 1086873 29 100.0 37 ............................. TAAAGTATTTCAATCTTATAACAGTATGATTATAAAA 1086939 29 100.0 36 ............................. AACTGATATAGCATTTTGCTGTTCGTGTAGTCTTAT 1087004 29 100.0 36 ............................. TGACTAAATCCCTTATGGATGTGCATACTAAATTTA 1087069 29 100.0 36 ............................. AAAACTATTTTGATAATTTAAATATTAGACTTGAGT 1087134 29 100.0 36 ............................. AACAATTAAAAAAATTGAAAACAGAATTCCAGCAGG 1087199 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 32 29 99.3 36 ATTTACAATACAAAATGTTTCTATTAAAT # Left flank : CTCTCAATTCAATATCTTTATCCCAAGCATCCTCACACGCTTTTTTATCTTCATTCTGACTCATATTCTTTCATATTCCAATAATTTAATTTTTTCATCATTTTTATTTCCTCTAAATTTTATTTTTTAAATATGTATATCAGCAGTACGATAATTAAAATTACAATCAAAGCTGATATTTTTTCTTTTAAGGTCGTTTTTCTGATTTCAAAACTTATTTTTGATTTCCCGATTTTTATTTCTTTTTTCATATTTTTATGTTATAATGGTTGTGGGTGGAGGGTGACTATCCCTCAAACCTGTTTTCTATTTGGAAAACTTTATTATAATGCTGAAAATAAACAAGTTGATTGTAATTGTTACTTCTTTTATTTCCAGCATTTTTTTATTTTTCTTTGCCATTACAACCTTTTCAACTCCTTTCTTGATATAAGTATACTATACTTTAATATTAAAAGTCAGGACTTTTCATTTAGAGCCTGTTTACTTGAACGAAAGGC # Right flank : TCTTATCTTCCTCAAACTACCAATATAGTATACCACTTTTCCTCATTTTTGTCGATACCAATATTTTTATATATTTTTATAAAGAATTTCTTTTTATATTTTTATAAAACAATCAAAAAATCCAATAAAAATCGATATTACCGAAAATCTGTCGATGTATTAGCTTTTTAGTGTTATTACAGGTCGACAGATTTTGTTTAAAAGAAATTTGAAGTTTTATCATCTTCGATCCCCCAAAATTCTTTTTCTAACCATTTTTCTTGACGAGATTTAAAAATTATTAGGGAGTCCTTATCTTTGCGAATAAATTTTCCTAGTTCTATATTTAATTTTTTTAATAATACTGGTGTTATTTCGCCTTCAAATACTGATTTTTGAACATTTGTTAAATATTTTTTACAAGTTTTAAATATATTTCTGGAAATTCTGGCTCCATTTTCATCAGAAAGAATATCATAAACTAAAATTATATACATATTACCACCATATTTTGAATCCTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACAATACAAAATGTTTCTATTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1091293-1092753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYV010000001.1 Leptotrichia sp. oral taxon 417 strain F0703 HMT-417_F0703_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1091293 29 100.0 37 ............................. CCAAATATTGCGTTCATATTTGGACTAAGATTTTATA 1091359 29 100.0 35 ............................. AACATTTGATGTAAGATGTAGAAATGGTGCTTATG 1091423 29 100.0 35 ............................. TTATATTTTGTTAGCACTAACATTTATTGATTGCT 1091487 29 100.0 37 ............................. GCAGTTAATAAGAGTGGGTATCAAATAATTTTGAACG 1091553 29 100.0 36 ............................. GTCTTATCATACATTGCAACCATTTTATTTTTTAAG 1091618 29 100.0 36 ............................. CTCTATTCTTCTATTTTTTTAAATTCATCTGATGCA 1091683 29 100.0 35 ............................. TAAATATGGCACGGTTGCAATGCCCTAACTTAATC 1091747 29 100.0 36 ............................. ATTTATTGTATCTAAAATAAACATACCATTTTCATC 1091812 29 100.0 36 ............................. TCATCTCAGATAAGCTAGTATCTGTTTCATTTATGT 1091877 29 100.0 36 ............................. TGTAATATCTACGTTAGAATACATTCCGAAAGAAAA 1091942 29 100.0 36 ............................. TCATCTCAGATAAGCTAGTATCTGTTTCATTTATGT 1092007 29 100.0 37 ............................. TTTGCTCTGCCATGTCAGCAATTTCAATTATATCTTG 1092073 29 100.0 37 ............................. CTCTTAATTTATTTGCAATTTTAATTGAATATTTTAG 1092139 29 100.0 35 ............................. TTTTTAGTTACTTCCAAACTTTCCTTGATTGATTG 1092203 29 100.0 36 ............................. AATCTTCAGATTCTTCTTCGATGTAGAAATCTTCTA 1092268 29 100.0 37 ............................. ACAGTTACAACAGCAGAGGAATTTAAAAAAAATCCGA 1092334 29 100.0 36 ............................. GCATTTGTAGTTAAGAAAGCTACTACATTTAACTTC 1092399 29 100.0 36 ............................. GTACCATTTAAAGTACACGTAATAGAAGCAGACCAC 1092464 29 100.0 36 ............................. TATATAAACAATAAAATACAAACAACTGTTATTCCT 1092529 29 100.0 36 ............................. CCATATAGCTTTGAGCCTTGCTGAGTTTGCTGTATT 1092594 29 100.0 37 ............................. TCGTAAAGTTCTGTAACATTTATTTTTTTGTATTGTC 1092660 29 96.6 36 .........A................... CGAGATAAGATAAATAGAGGTATTTTAGAATTTGAT 1092725 29 89.7 0 ..C......A.............A..... | ========== ====== ====== ====== ============================= ===================================== ================== 23 29 99.4 36 ATTTAATAGGAACATTTTGTATTGTAAAT # Left flank : CTTATTTTTCAACAACAATTTTTATTTTATTTAAGTGAAACATACTCTTTAAAACTCATATTTCTATATTTTAATTATACCATATAAAAAACATATTTTAAAATTAAAAGATATTTAATAAATATTCAAAACTTATTATTTCAAGACTAGGTAACACCATTATTATTAAAAAATTAAATATAAAGTCAGGAAAATTTATCTTCAAAAACAAGATTTTTTAATAATTTTTAAATTAGGCCAAGAAAAATAACTAAAAAAAGAATTTTAGGAAATCGAAGATAATAAAACTTCAAACTTCTTTTAAACAAAATCTGTCGACCTGTAATAACACTAAAAAGTTGGAACACCGACAGATTTCTTGTAATATCGATTTTTATTGGTTTTTTTGATTGCTTTATAAAAAGATAAAAAGAAATTCTTGATAAAAATATATATAAATATTGGTATCGACAAAAATGAGGAAAAATGGTATACTATATAGGTAGTTTGAGGAAGATAAG # Right flank : TTTAAAATAAAGAAAACAAAAAAACTCCATTCATTTCATAGTGGAGTTTTCTATTAATTTTAATTTCTAAATTTGAATATTTAATTTTCTTAAAATTCAAGTCTATTTAATAAATTCCAAAAATTCTTTTACTTGTTTTTTCAAGGCTTCTTTATGCTCATCAGTTAAGTTCAATATTCCTGTTTCCCATGCTTCTGCTGGTGCGATTAAACCTGTTCCAGTTCCTTCCATTGGATTCATACGGATATATGAAAATAATGTTGAAAGATTTTGTCTTACAAATTTTCCTTCAGTTGAACCTGCGATACTACTTACAGTTACTGGTTTTCCTGCTATTACTGTTGGTGTTTCCCTATCAAAAGCCACTAATGGACGAGATAGCCAATCCAATAAATTTTTTAATACAGCTGGGTAAGAACCGTTATATTCTGGCGAAACTACCCACACAGCATCTACTTTTCCAACTTGTTCACGAACATCTTTAATTGATTGAGGTGCTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAATAGGAACATTTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 1168037-1168225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYV010000001.1 Leptotrichia sp. oral taxon 417 strain F0703 HMT-417_F0703_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 1168037 41 100.0 32 ......................................... CACTAACCTCCTTTAAAAAATAATTTAGATAA 1168110 41 97.6 34 .....................................C... TATATAACATAAGTGTATTTTATTTATCTAATAA 1168185 41 92.7 0 ................................A...A.C.. | ========== ====== ====== ====== ========================================= ================================== ================== 3 41 96.8 34 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACATAA # Left flank : CAGTAAAAGAATTTCCGAAAAGCAATCTTTTAAAAAAGGCTGAAGAAGCCTTGAATAAAATATTTTCATCTATGAAGTAAAATTATTGAAAGTAAATTTGAAGAAAAATACTAAATTACAAAAGTTATTTTTATAAATTTTCTAGCAAGGGGTCAAGACCCCTTGTCAATAAATAAAATGTAAATTCTGTTTTTTAGTATAAGTCTAGTGTTAGTATCTTTTTATTTAGGAGAATAAATTTTGATAATAATTTTTTAAAAAAATTTTGAAAAATCAAAAAAATGTGGTACAATAAGTTTGTAGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGGGAAAAACCTATTCAAAGCCAATAAATATGCACGTTAGGAGTTACGGAAAATGCAACAAAAACAGCAAAAAATGATAAAAATTAAGCCAAAAAATACGATTTTAATGTCTGAAAAAATCTCTGTAATACTGATAAATAAAGGATTTTCTCAAAAGTACGG # Right flank : ACAACTTTTTTATAAGGTTGTTTTTTTTGTTAGGAAATAAAATAGGGGGTTGAAAAAAAAGTAAAAATATGTTATTATAATTATAGAAAATAATTTTAGGTAGAGAGTGGGTTAGCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAACAGATTTTAAATGAGTTTGAGAAGAAAATCGAATCGCATTTAAAGGAAATGAATCTGGAGTTGGCAGATTTGGAATATGTGAGGGATGGGGGATATAATTATTTGAGAGTGTATGTGGAGAAAATGGATGGGACTACAACGCTTGATGATTGTATTGATTTTAGCCGTGAGATTGATGGGATTGCGGATGACTTGATTGAGGAGAAGTTTTTTCTGGAGGTTTCTACACCTGGGGTTGAGCGTAGATTGAGAAAGCCTAAGGATTTTGTGAGATTTTCGGGAGAGAGAATTAACGTCCAGGCTAAGAACAATATTGAAGGGGCGAAGAAATTTATAGGAAAATT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 1571249-1570161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYV010000001.1 Leptotrichia sp. oral taxon 417 strain F0703 HMT-417_F0703_contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1571248 37 97.3 37 ........................T............ AAGAGTTCTGTATAATGAGTACAACTTGGTATGGGAA 1571174 37 100.0 40 ..................................... CGTCAATTAATAATAAATTAATCATATATTTCCTCCTAAA 1571097 37 100.0 39 ..................................... ATTCATGTAATCAATTTCTTCTTCTGTCAGACTTTCATA 1571021 37 100.0 38 ..................................... CCCATATCTAAAATATCGTCCAGTACTTTATCAGTGTC 1570946 37 100.0 38 ..................................... ATTATATCTGGAATTCCAGACCTTGTTATTTAGATATT 1570871 37 100.0 40 ..................................... GACAACTTAAATACATCGCATTCGTTTTGTGTTAACTCAA 1570794 37 100.0 38 ..................................... ATGGTGGTAAAATGTTCTTTTATGAAGAGATAACAAAT 1570719 37 100.0 37 ..................................... CAAATCTACTTTTCATTTCTATACCTCCGTATTTATT 1570645 37 100.0 38 ..................................... CTTTATCCCCCATTTCTGTAGCGATTCTTGATACTTCC 1570570 37 100.0 36 ..................................... TTGATCATTCACAAATACAAAGACTTAAACCAGTTC 1570497 37 100.0 38 ..................................... CTTTATCCCCCATTTCTGTAGCGATTCTTGATACTTCC 1570422 37 100.0 39 ..................................... TTTCCTGCCCCAGCTCTGTTAGCACGTTTTTCAAATCTT 1570346 37 100.0 36 ..................................... AAGAAGGAGCTTGTAAGAAGCTCCGTTCTGGGTGGT 1570273 37 100.0 39 ..................................... TTTGTACCAGATACAATTCTTTACTAAATCCTCATCAAA 1570197 37 91.9 0 .............................G.GA.... | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.3 38 GTTAAAGTAGAGTATCCATTAAAACAAGGATTGAAAC # Left flank : CTAGAGAAAGAGCATATTTTGTTAATTGAAGGAATTAAGAAGTTAATTGAAAATTAAAAAATCTTAATTATTTGGAAAGTTAAAGTAAAAATGGACAAAACATGGATATACAAAGAAATATTATAGTTTCTTTCTCTTAAAAAAATTATATTTTATTTATAGGTAAGGGGTCTTGCCCCCTTGCTAACAAAATTCATAATAAATTCACTATTTAAATGGGAGACAGCATAAGCTATTTATGTTATACAAAAAATTAAAAAAAATTTTGAAAAATCAGAAAAATATGGTAAAATAAGACTGTGGAAAAAATTCCTACCACTATAAGAAATGAAAAATAAGAAGAAAAATCCACTCAAAGTCAATAAAAATGAGCATTAGGAGTTACGGAAAATGATAAAAAAACAGCAAAAAATAATAAAAATTAAGCAAAAAAATGTGATTTTAATGTCTGAAAAAATCGCTGTAACACTAATAAATAAAGGATTTTCTCAAAAAGATGG # Right flank : AACTTTTTTATAAGGTTGTTTTTTTGTTATTGTCAAATATGAGAATAAAAAGCAAAAAAAAATAGAGAGTCAATACAAATTTTGTATATTCTCTCTATTTTATTTATCATAAATTGTATAATTTCAAAAAAGATTTTCAAAAACTATCTTGAGTAAACTTTTGTTAATTTAGCAATTCTTTCTGCTAGTTCATCAGTTAATATGCCTTCTTTCAATCTCCATTGCCAGTTTCCGCTAGCAAGTCCAGGAGTATTGATTCTAGCTTCACTTCCTAATCCTAAGAAATCTTGGATTGGAACGATTGCCATGCTTGCGACAGAGCTCCATGCACCTCTTATTGCATCCCAATGAATTTCATCATCAGATCTTGAGTTTAAATAGTCTCTTGCAAATTGCTTATCGTCTTCATTGGCTTTTGTGAACCATCCGATTAATGTGTCATTATCGTGAGTTCCTGTATAAACTACACAGTTTTTTGTGTAAGTATGAGGCAAGTAGTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAGAGTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 6 2308220-2307727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYV010000001.1 Leptotrichia sp. oral taxon 417 strain F0703 HMT-417_F0703_contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2308219 37 100.0 40 ..................................... AGCCTGAAGTGATTTACCGAAGGAGATGTCGCCATCATCC 2308142 37 97.3 38 ........................C............ CCATTTAATGTAAACTCTAAAGAGATAGTTCCGTCATT 2308067 37 100.0 38 ..................................... TCTGTTATATACATTCCAGTCTTTCTAATCATAGGTAG 2307992 37 94.6 41 ......A.................C............ CACTCCATGTATTCAATATCAACAATATGATCTATGTTATC 2307914 37 97.3 38 ......A.............................. GTTTTGAAACCTTGTTTATAGGTTGTTTTATTATCCAA 2307839 37 94.6 40 ...........A............C............ TCTTTAATAGGAGCGAAGTTTGAATTTTTATCTACCATGA 2307762 36 89.2 0 ......A.................C.......-...T | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 96.1 39 GTTAAAGTAGAGTATCCATTAAAATAAGGATTGAAAC # Left flank : TTGCTCAAAATATAAAAAAAGGAACTGAAGAAGTTTTTGAAAAAACAGTAGAAGGTGCAAAAGACTTGGCTAATAAAGCAGCAAATAACAAAATTGTTAAAGATGTGGAAAAAGGTGCTGAAAAAGCAGTAGATAAGACAGTAGAAGGAGCAAAGGACTTAGCTGGTAAAGTTACAGGAATGTTTAAAAAATAGTAAAAACAAAAATGTACTAAAAAGAAATTATTTGGAGTATCAGTTTTGGTACTCCATTTTTAAAAAAAATTTTGAAAAATCAAAAAAATGTGGTAAAATAAGTTTGTGGTAAAAATTCCTACCACTACCAACAATAAAAAAATTAGAGAAAAATCTATTGAAAGCCAGTAAAAATGCAGGCTAGGAGTTACGGAAAATGCCAAAAAAACCGCAAAAAATAACAAAAATTAGTCAAAAAAATGCGATTTTAATGTCTGAAAAAATCTCTGTAACACCGATAAATAAAGAATTTTCTCAAAAGTACGG # Right flank : TATTCGTTAAAAACAACAACTTTTATATAAGGTTGTTTTTTTTATTTGTAAAAAAAGATTTAAATACTTTAATCCATCAAATTTTTAAAATGTTTTGTTATTTTTGGGAAAATTTGATATAATTTATGCAATAGGAATTGGATTTTGGGTGATGAATTTGAGTAATGAATAAAAAATATTATGTAAAGTCAAATTTGGAAAGGAAATTTTGTGAAAAAATTAAAAGACTATTATGACAGGTTTAAGAGTTTGAATCCGCAGTATTCGGGAATAAAATTGGGGATTATTGTTGCAGTTATTGTTTATTTTGTTGCAAGAATTTTTTTTGTGGTGGAAATTTCAAGGGATATGATAATTTCACTTGCGGTTTTTGTAATATCAATGACTTTTCATGAGGTGGCACATGGATATGTGGCTTATAAATTTGGGGATAATACGGCAAAAATGAATGGGAGGATAACCTTGAATCCCCTAAAGCATATTGACTTGACAGGGATAAT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAGAGTATCCATTAAAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //