Array 1 65020-59345 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMU01000006.1 Photobacterium phosphoreum strain FS-3.2 CFSAN065485_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 65019 32 100.0 35 ................................ TTATTACAAATCACTGACAGTGGCCCGGCGGTGTC 64952 32 100.0 34 ................................ GGCTTGGTGTTAGCTTGGCTGGCCTGTTTTGCTT 64886 32 100.0 35 ................................ GTAAATAACATACCATCAGTAAAATCAAAATATTG 64819 32 100.0 35 ................................ AAACAAGCGGTAAATGATGGAATAAAAAGCCGGTA 64752 32 100.0 34 ................................ CTGAGTTAATCGACACGTTACCACAACAAGCGTT 64686 32 100.0 35 ................................ TGCCCCAAAAAGAGCAACTTAAAATTAGCAGCAGC 64619 32 100.0 34 ................................ TTGTTGTAAACACGCCAATAAATAGCGCTTTTAC 64553 32 100.0 34 ................................ TGGATCAGCTGTATGAGCACCACCACCCACTTGA 64487 32 100.0 33 ................................ ATCAGTTTGGCGACGGAGAGAGCAGCAGAAGAA 64422 32 100.0 33 ................................ GTGATGTATCGCAAACGGCGAATGGCAATCTGT 64357 32 100.0 34 ................................ GGTTTCATCGGCACCGCCTTGATCATCGTTGCCA 64291 32 100.0 34 ................................ AACCGGCACCAGCGCAATTTTTTCAGCGCGGCCA 64225 32 100.0 36 ................................ CTCAATCTTTGGTATCATATACGAGCCGAACTCCTC 64157 32 100.0 34 ................................ GGTTACAAGACAGAAACAAAAGGTGGAAGTGACG 64091 32 100.0 35 ................................ TTTGAACCCGAACCAACAAAGGTTGATACTGGATT 64024 32 100.0 34 ................................ TGACGCATGGCCTCAGCAGTTTTATCGCTGATTT 63958 32 100.0 35 ................................ GCTTGCAATCGTGGTTGCCAGAATCAGCGGCTAGA 63891 32 100.0 34 ................................ CGAAATGATGACTAAGTACGGAACGCCTTATATT 63825 32 100.0 34 ................................ ACTGTATTATGATCCGGTTCATCACTGATAAAAT 63759 32 100.0 34 ................................ CAACTTATAAACAGCTTACTCACAAACACCGGGT 63693 32 100.0 34 ................................ TGTGGGATTGAATTTGCTTTGTGGTTTTATCGTG 63627 32 100.0 35 ................................ ATCCCCTCGATATTAGTAACAACAACACGACCAGA 63560 32 100.0 35 ................................ TTATCTAAATCGCAAAACTTTGACATTACAAATCC 63493 32 100.0 34 ................................ TTTTTGCGCCTCACTTGCCATGATGTCATAAATC 63427 32 100.0 36 ................................ GATTGATGACAGCTCGTCGTAAACAGCATCTACCTG 63359 32 100.0 36 ................................ TTCACGATGCAGAATCATATCTTCGTGTTCATTGAC 63291 32 100.0 35 ................................ ACAAAAAGTTTTTACAGGCTTACCTTTATCTTCTT 63224 32 100.0 35 ................................ GATACTGAGCAATGTTTAGATTAGCTAATGAATAA 63157 32 100.0 33 ................................ TAGCATCCATCGTAGCATTGCCGTGGTTTTCAA 63092 32 100.0 34 ................................ TTTGCTATTCCCACTACAAACTCGGATCGCTTGT 63026 32 100.0 34 ................................ ATTGCATGGTTAAACTTAATTTGATTTTGTAGGT 62960 32 100.0 35 ................................ CGTGGTAGTTATAATCAACAGGTCGTAAACCACGG 62893 32 100.0 35 ................................ ACATAACAATAAAGCACCATCACCATCCAAGTTAA 62826 32 100.0 34 ................................ TCGTTTAGATTATCAATATCCTAATATGCAAGAT 62760 32 100.0 34 ................................ CCATTTGCCGCGCTTATAGTCAATCATGTACAGA 62694 32 100.0 34 ................................ TACTACTAAGCACAACATGCTTACCTGTTTCGAT 62628 32 100.0 36 ................................ AATGTTACCGTTGCTTTACGTGTAGATAACATCAAA 62560 32 100.0 35 ................................ CCAACTTAAAACTCGAAGTGCATGACCCGCGCCTA 62493 32 100.0 34 ................................ AGGCACCACAAAGCTGTGAAACCAATGTTATATC 62427 32 100.0 34 ................................ AGCGATAAGATCAGCGGTGTCGGCACACCCGCTA 62361 32 100.0 34 ................................ AAGACAATGTACTAGGAAAGACTATCGGCAAAGC 62295 32 100.0 35 ................................ TAATACTTTAATGCAGCAGATAACAAGTGCGCGCT 62228 32 100.0 33 ................................ TAAAAAGCCGACCTGTTCGGTAATGTTGGCGAT 62163 32 100.0 35 ................................ CGTTAGTACCTCATGCATCGTCATAAACTCCTGCG 62096 32 100.0 35 ................................ ATTCTTTGAGCCTAATAATCAGCAGCAAGGACAGG 62029 32 100.0 35 ................................ CTGCTGTGCATTTATACGGATAATTACGAGATCCT 61962 32 100.0 34 ................................ AATATTAGTAACGACAACACGTCCAGCCCTCAAA 61896 32 100.0 35 ................................ ACCGCCACCACCACCGCCATCAATACCACCGTCAT 61829 32 100.0 35 ................................ CCAACATTGGCGCTTGCAAAATCACAGGAACTGGC 61762 32 100.0 34 ................................ AAATAAGAAACAATGTAAGCGTTATGTCATCAAT 61696 32 100.0 35 ................................ TTCTGTAGCGAACTTGCAATGTGAACGTACTGTAA 61629 32 100.0 35 ................................ ATTTAGACAGCTCCTCTAAAAGTGCGTCTGCGAAC 61562 32 100.0 34 ................................ TGAAATGTTGTAAGTCATGTTATTTACCTTTTGT 61496 32 100.0 34 ................................ GAGATACCTGTTCTAACGATTAACGATCAACTTG 61430 32 100.0 35 ................................ CCGTTACTATACTCAGTGATAAACTCCTGATTAGT 61363 32 100.0 34 ................................ ACTTGGCAGGGCGTTATACCATTTCTTATAACGC 61297 32 100.0 34 ................................ TGTTGTTGCTGCTCCTGCTTTTGCGACTACTGGC 61231 32 100.0 34 ................................ CAGCAGTAACAGCGCCTTGTTGTGCTACCGCCTG 61165 32 100.0 34 ................................ CCTCGCCAACTGGTCAGCTAAACTAGCGGTCTGA 61099 32 100.0 34 ................................ AATAATTGCGTCATGGGTTGTTTGTCTGGCTGAG 61033 32 100.0 34 ................................ TATAAATCGGCGTTGCTCTTGTCGTTTTTGTAAC 60967 32 100.0 34 ................................ TGCTCGCTAATCCAACAGTTTAAAGTCATACGCG 60901 32 100.0 34 ................................ TGGCACTAGACCGAATGGTAAAGGAAAGCTTTAC 60835 32 100.0 34 ................................ CAGTAAGCAGACCGCCAGAGCGTGGGATTTTAAA 60769 32 100.0 34 ................................ ATGTTTGTTGCTATGTCAATGACAGGTAGGGAAG 60703 32 100.0 34 ................................ GCGCTACTCACGCCAAACGCCACGAAATAACTGT 60637 32 100.0 34 ................................ TGATCGCTAATATCGTAAATACAGATCAAGAATT 60571 32 100.0 34 ................................ CATTCAGGCGGAACGATCCCTCAATTTGCAAAGC 60505 32 100.0 35 ................................ TTTTACTTCTTCGCTACCGCCACCCATACCTGCTC 60438 32 96.9 36 .................G.............. AAATACAATATCAAACATTGGCATGTTTTCACTCCG T [60421] 60369 32 100.0 34 ................................ AAATTGATCACAATCTCAGTATTATCACGCTGAC 60303 32 100.0 35 ................................ CATTAACATGTTATGCGCTTCTGCTTCTAGCTGGC 60236 32 100.0 35 ................................ CTTATACCGTTCAGCTTGAGCCTTAAAACACTCAG 60169 32 100.0 33 ................................ ATAACGACAACGATAGTAATAACCCATACCGAT 60104 32 100.0 33 ................................ CTAATCATTACCAGTTTGAGGTATCAACACCAA 60039 32 100.0 33 ................................ ATTAGCTAACGAATTGAATGCATGAGCCATTGC 59974 32 100.0 34 ................................ CCTTTTCACCGTGAATCTGACGACATTACACTAA 59908 32 100.0 34 ................................ ACAACAGAGACAATCATGAATAAATCATATGCAT 59842 32 100.0 34 ................................ GCAGAATTTGAACGCCGCGCGCTAAATGTGGCCC 59776 32 100.0 35 ................................ ACTGCAAACGGATTTACAAAAAACAACCCACATGG 59709 32 100.0 35 ................................ CCGTTTTTCTTGGTGGCCGTGGTGGCAATTGGGTT 59642 32 100.0 35 ................................ CTTGCGATGTTTGGCAACAGTGCCGTATTTGGTTT 59575 32 100.0 35 ................................ ATTATGCTGCTTAATTGCAGTCACATCAACTCATC 59508 32 96.9 34 .................G.............. TATAACAATAGCTATAACCATTTTAAAATGTACC T [59491] 59441 32 100.0 33 ................................ TTTTCGTACAACACACACAAATCATACGGATAA 59376 32 84.4 0 ..............C.....AA.AT....... | ========== ====== ====== ====== ================================ ==================================== ================== 86 32 99.7 34 GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Left flank : TTCTATCAACGTTAATAGAGAGCGCTAACTATGATGGTATTAGTAACCTATGATGTCTGTTTAAGTGATGCATCTGGTAAACGTCGACTACGTCAAATAGCCAAACTTTGTTTAGATTATGGTGTAAGAGTTCAATATTCAGTATTTGAGTGTGATATAGCACCAGATCAATGGGTCAAATTTAAAGCTAAACTACTGGCATTGTATGAACCAGAGGTAGATAGTTTACGTTTTTACCAATTAGGGAAAAATTGGCGTCACCGCGTTGAACATCATGGTGCTAAAGTTGCTGTCGATATATACCAAGATAACTTGATTATCTAATTCGCTAACCTTCTGTTCTCATGAAAAACCCACTAGGCTAGCTCAATTTTAATTCACTGATCATAAAGTTCTTTTACAATTTAGGATCTACTATTCAAAAAATCATCTTACTTTTAAATATGGTTAGCGCAAAAGAGCTATTCAGCGTAGGCTACGCCAGCCTTACCCAAAAGGCC # Right flank : TAACTCTCACCAAACAAGCATCGCAAAAATACTATCCAGCATTATCGAGCCAACCAATGGCACTTAGTCTGAATTAATTGGTGATACTTTTCTGGCGTATCAATATCATGATAAATACCACTCGCAGCGTTCAACTGTAGATAATGTTCAGTGCCTGTTTGTAATACTTGTTTCATTTTAGCTGTAACGGGTAAAGCTAAAATTTGAGGGATTAACTCAGCATCAATCAAAACGGGATGTCCTGTTTGCTGTTTGTTACCAGGAAAAACCACTCGCGTATGATCCACTTGCAATAACATCCTAAATACCTGCGGATCAATACAAGGCATATCAGCATGAGTGATAAAAAACCGTGAGCTGGTTACCGCTTCAATACCCTTTTGAATTGAGCTTAACATCCCTTGCTGATAGTCAGGATTCACCACCACCATAATATGTGGCTGATGTTGATATCGCTGTACCAATTCATCGGCTCGATATCCTGCAACCACGATCACTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //