Array 1 540-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJZ01000022.1 Cronobacter sakazakii strain cro1913B3 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 539 29 100.0 32 ............................. GCTGCACAGGATACCGCCAAAAAGGCGGCGGA 478 29 100.0 32 ............................. CGTACATAGTTAAGTCCTTACGTGGTTATTTG 417 29 100.0 32 ............................. GCCGTATTCATGACGGTGACATACTGGTTGTG 356 29 100.0 32 ............................. GCTAAAGCAGTATGGGAACCTTTATCAATCGA 295 29 100.0 32 ............................. ATCTGATTCTCGACCGATTAAGGAAAAAGCAA 234 29 100.0 32 ............................. TAATCGAATTCGGCCTGCTTAACGATTTTCAC 173 29 100.0 32 ............................. GCCCTTCTCGGTAATCCCCAGGGCGGATCATA 112 29 100.0 32 ............................. ATAGTTGAGCGCCTGTCTCATCAATCGGACTA 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACTGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAACCGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGAACCCAGCACGGCAAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28088-26841 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJZ01000022.1 Cronobacter sakazakii strain cro1913B3 contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28087 29 100.0 30 ............................. ATAACACGCAGCTTTATCAGGTTTTATCGA 28028 29 100.0 32 ............................. CGGGCTAACACTTCATATCCCGCGTCCGCAAA 27967 29 100.0 32 ............................. GGCTGCGCAGCTGCAAGACTGGCTGGAATTAC 27906 29 100.0 32 ............................. CCCCTCTGACTCAAACTGCTTTTTGACGTACT 27845 29 100.0 31 ............................. GCGTGCGGGTCGCTGGCGGTGTATTTTGGTG 27785 29 96.6 32 .C........................... CCGGCATAATTAACCTGACACTGCCTGATTTG 27724 29 93.1 32 .C..........................A TTTTCATTGGCAACATAGAAAAGTTTGCCAAC 27663 29 96.6 32 .C........................... TGATTGGCATGATTGCGTTATTCATTTCATCT 27602 29 96.6 32 .C........................... GTTCTGGAAAATAGCCGGGCCGACTGCTGGCT 27541 29 96.6 32 .C........................... GGATATTTTTAAATCATCCGGCAACCCGGCTT 27480 29 89.7 32 .C...........A......T........ GGTGGTTTAAATCACTGTTACAGGTAGTCGGC 27419 29 93.1 32 .C.C......................... GACGCAGCCCGGATGTTGAGCCTTTCTACGAA 27358 29 100.0 32 ............................. CGGTAAAAATCATCAAATGTCAGTTCAGTGGG 27297 29 100.0 32 ............................. ACGATAAGGTGGATGGTTTTGCTCCGGCTAAA 27236 29 100.0 32 ............................. CGCTTTTTTTATGGAATAGGCAATGACGGGGC 27175 29 100.0 32 ............................. CTAAAGCCATTTCTGATTACGAAGGCTCAAGC 27114 29 100.0 32 ............................. TTACGCGCTAATTGCCCGCGGCGCGTACAGCG 27053 29 96.6 32 ........T.................... AACTGACAGCGGTTGAAAAAACCGCGTATTCC 26992 29 100.0 32 ............................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 26931 29 96.6 32 .C........................... TACCTTGAGAAAACCGCGCAATCTGTGCTGGT 26870 29 79.3 0 .C...........C...A..A....C..T | T [26843] ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CGCGAGCGGGGATAAACCGCGAGCGAGGTTATCCGCTATTTAACCGCCCCG # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTTGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41-313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJZ01000006.1 Cronobacter sakazakii strain cro1913B3 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. CGACACGATCCGCCGCCTCGGCTATGAGGCTG 102 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 163 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 224 29 100.0 32 ............................. GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 285 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATAAACCGCGTGAAAAGGGATTCTCGGTTAAGGATCTCAGG # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27230-27023 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJZ01000015.1 Cronobacter sakazakii strain cro1913B3 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27229 28 100.0 32 ............................ GGTGCGCAAAGCCGTTTCCAAGCTTGTCGATA 27169 28 100.0 32 ............................ ATGATATCGCAATTAAGCCAGATAGCCGGTTT 27109 28 100.0 32 ............................ CAATCCTCCCAAGCGACGTTATCTTTTTTGAC 27049 27 89.3 0 .....................CG-.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGAGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGCAAAACCACATTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1042-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJZ01000017.1 Cronobacter sakazakii strain cro1913B3 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1041 29 100.0 33 ............................. CGGCGAATAATGACGGGGCTTCGGCCCCGTTTT 979 29 100.0 32 ............................. ATTTTAATCGTCGGTATCGGCCAATCCTTCAT 918 29 100.0 32 ............................. TTATCGACGTGGCACGTCAATCAACTGATTTG 857 29 100.0 32 ............................. TATTCCTTACTGAAACTACCCTCGCCTTGCGC 796 29 100.0 32 ............................. AGCACTGGCATTAGCCTCGTCGGGGTTTTCCA 735 29 100.0 32 ............................. TCCAGCCATGCTGCGCCGCTACGTTCTCCATT 674 29 100.0 32 ............................. CCAGCCACCTTACATCCCGTTACTTCTGCCGA 613 29 100.0 32 ............................. ACGTTTTGCCTTTTCCTCTTCATAGCGCTGCC 552 29 100.0 33 ............................. GCGGTCGCGCTGCGCCATATAGTCGCCGCCTAC 490 29 100.0 32 ............................. TTCACGCCGGCTGATAACGCAAACCGGGCGCG 429 29 100.0 32 ............................. CTGGTCGTGTGCTGATCGTTGGCGCTTTCGGA 368 29 100.0 32 ............................. GTTTCTTTTGCGTTGTCCGTAAGAACTGAATA 307 29 93.1 32 .C..........T................ CATCCCATACACCGCAGATTTACCAGAAGTGT 246 29 93.1 32 .C..........T................ AATACCGCCGTCTCTTCGTCGAGAGCAGCAGC 185 29 96.6 31 .C........................... ACAGTATCTCCCTCTTTTTTACGTATCGTTT 125 29 96.6 32 .C........................... CCCGGACGCGGTATCTAAAGGCGTTGAGGACG 64 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGCCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCAAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GCAGACGCCAGTAACACACGCGCTGGTCCTCGTCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //