Array 1 535543-537035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWR010000002.1 Salmonella enterica strain 4 NODE_2_length_661281_cov_383.630126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 535543 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 535604 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 535665 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 535726 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 535787 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 535848 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 535909 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 535970 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 536031 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 536092 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 536153 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 536214 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 536275 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 536336 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 536397 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 536458 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 536520 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 536581 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 536642 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 536703 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 536764 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 536825 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 536886 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 536947 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 537008 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 553167-555009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWR010000002.1 Salmonella enterica strain 4 NODE_2_length_661281_cov_383.630126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 553167 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 553228 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 553289 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 553350 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 553411 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 553472 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 553534 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 553595 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 553656 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 553717 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 553778 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 553839 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 553900 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 553961 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 554022 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 554083 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 554144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 554205 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 554266 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 554328 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 554389 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [554431] 554431 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 554492 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 554553 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 554614 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 554675 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 554736 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 554797 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 554858 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 554919 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 554980 29 96.6 0 A............................ | A [555006] ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //