Array 1 61890-61365 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RCJP01000001.1 Moraxella catarrhalis strain 64/108/1 NODE_1_length_422915_cov_14.067405, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                                 	Insertion/Deletion
==========	======	======	======	============================	================================================	==================
     61889	    28	 100.0	    33	............................	AAAATTGCTCATTGTCTGATATTCGTTATCTTC               	
     61828	    28	 100.0	    32	............................	TCGACCGAAAGGGGTCGGTACTCTTTCTTCGT                	
     61768	    28	 100.0	    32	............................	ACCCCAAGATGTAGATTTACCCCTTGCCACCG                	
     61708	    28	 100.0	    32	............................	AGTATAGTGATTTTCGCCATTGACACACTGGA                	
     61648	    28	 100.0	    48	............................	ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA	
     61572	    28	  96.4	    32	.............T..............	TTTGGTGATTACAAGCTACCGTCCGAATTTCG                	
     61512	    28	  96.4	    32	.............T..............	AACTCGGCAGCAATACCGCCAAGACATGTAGG                	
     61452	    28	  96.4	    32	.............T..............	AACTCGGCAGCAATACCGCCAAGACATGTAGG                	
     61392	    28	  96.4	     0	.............T..............	|                                               	
==========	======	======	======	============================	================================================	==================
         9	    28	  98.4	    34	CTTCACGACCGCACAGGTCGCTTAGAAA	                                                	       

# Left flank :   TCGCATTGCGGCTTGGGTGATAGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATTCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT
# Right flank :  TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCATCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGAAGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATGCG

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   CTTCACGACCGCATAGGTCGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [0-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//