Array 1 29832-30637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMX010000001.1 Listeria monocytogenes strain 2014L-6305 NODE_1_length_1227713_cov_70.0403_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 29832 29 100.0 36 ............................. GAAGAAAAAAATCCGAACATTGAGCAATGGGCTCAT 29897 29 100.0 36 ............................. CTTATAATTGGTAACGCGATACACAAAGGTATTGAG 29962 29 100.0 35 ............................. AACAATATCATGACTTTGTTATTGCTGTCACCAGT 30026 29 100.0 36 ............................. TTTGAAATCAAAACTAGGTCGAGTAGCGTGCAAACA 30091 29 100.0 35 ............................. ATTATTTCTAGAGAGCGTTGGGAACAATACTTAGC 30155 29 100.0 35 ............................. CATCATATCTATCACTATCAGATAATCCCGCGATT 30219 29 100.0 37 ............................. GGCATTGACAAAATCCAAAAAGTTGCCGATTATTTCA 30285 29 100.0 37 ............................. GCGTATGAAGATACGGAGGTTGATTTAGTCCGAAGTG 30351 29 100.0 36 ............................. TTGCTCACAAAAATGGATTTTAAATCGTCGCCATTC 30416 29 100.0 35 ............................. GCCTTATACATACGAACTGGACTTGATTTAAAATC 30480 29 100.0 34 ............................. GAGTTAGTTGGCCAGAACTGTATAGGAGCGGTAG 30543 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 30609 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 98.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATTTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCATTCAGATTTAACTCCACCACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 47526-48911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMX010000001.1 Listeria monocytogenes strain 2014L-6305 NODE_1_length_1227713_cov_70.0403_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 47526 29 100.0 37 ............................. TTTTCAGAACAGAATCGGATTATAGAGCGTAGTTTTC 47592 29 100.0 35 ............................. TTGTATTTATCTTTTAGAGCTGATACAGTGTCCAT 47656 29 100.0 35 ............................. AAGGCAGTAAGAGCGCTTTTGGATAACGACAAACT 47720 29 100.0 35 ............................. TGTCGCGTTGTAGTATCACCTTTTGCACCTCTGTT 47784 29 100.0 36 ............................. AGTTCCGCTGTTGAGATTGAAAATATCGGCACTTTG 47849 29 100.0 35 ............................. AATAACGACAAACAAGGTTATCAAGACGGCTCTTA 47913 29 100.0 35 ............................. TTATTTATTGATCAATATATTCAGCTCGTAGGATA 47977 29 100.0 34 ............................. ACGGAAACAAAAAAAGAAGAATACAGTAGAAAAG 48040 29 100.0 35 ............................. ATTTTTAAAAATGTTATTGATTTTTTAAATGAAAA 48104 29 100.0 36 ............................. TGATTAAAATTTCAGATGGCTTGTCTTTCGGTCTAA 48169 29 100.0 36 ............................. TTCAATCATTATGACAGCTTGTTCAAGCTTAGAGCA 48234 29 100.0 35 ............................. GTTATCTCCCTTTTTATGTACCAATCTGCGGCCGC 48298 29 100.0 35 ............................. CAATTGCAATAATTCTATCGGCTTTTAAAGCGACC 48362 29 100.0 35 ............................. AAAGTTTCATCTTCGCCGTCTAAATCGTTCCAAAA 48426 29 100.0 37 ............................. ATAAAATTACACATTGGACTCCAAATATTTTCAGATG 48492 29 100.0 35 ............................. GTTGTTTCTTACTCAACCCCAACGCCTGTTTACTC 48556 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 48620 29 100.0 36 ............................. CTGATGTAGCTTGTTTTTAACTGTTCGGTGAAATAA 48685 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 48748 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 48817 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 48882 29 93.1 0 .......................A....C | C [48905] ========== ====== ====== ====== ============================= ======================================== ================== 22 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //