Array 1 82-947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQI01000180.1 Leptospira interrogans strain 56135 Contig180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================================================================================================ ================== 82 35 94.4 224 ..............................T..-.. GAGGAGAAGATTTGTTTTAGCCCAAATTGTTTGCTAAAGTGTGTAAACGGATAAAATGTAGGAACTACTACTTTTTCGAAAAACAGTACTTTGTTCAAATAAATGTGGGAACTCTCACTTTCAAAAAAAGGATTTCTAAATTTCTTAGGTCAACTTACAAAAATCGGGATGCCGTTGGCGTTGAACACTGAATCTATGCGGTGCAGATCTACGCGATGCAGATC A [110] 342 36 100.0 35 .................................... TCGATTTGCGGAGGAAGCGAGACCGTCGGATCCTT 413 36 100.0 36 .................................... GAGAAGAGTATCTGGAAGAGATCCTTGAACAAGGAA 485 36 100.0 35 .................................... CAAACGGATCCGAACTACTCGGACCACCGGACATG 556 36 97.2 35 .....................G.............. TCTAAAGGCGCGGGAAGTATATCACGTAATTTAAG 627 36 97.2 35 .....................G.............. CGACTGTAGCCGTGCGACATGACAGTCTTTCTGTC 698 36 97.2 35 .....................G.............. TCGATTTGCGGAGGAAGCGAGACCGTCGGATCCTT 769 36 100.0 36 .................................... TCTTAGAGGTAAGTCCGACAGTTCCACTGGAACTTA 841 36 100.0 35 .................................... CCGATGATTTTCAAAACTACGGATCAGGGAACGGT 912 35 91.7 0 .....................G........T..-.. | A [940] ========== ====== ====== ====== ==================================== ================================================================================================================================================================================================================================ ================== 10 36 97.8 56 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : TTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTTGGAATATGGCTATTCACCATTCTGGCTAATCTTC # Right flank : GAGGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTAGTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 367-117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQI01000252.1 Leptospira interrogans strain 56135 Contig252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 366 36 100.0 35 .................................... GTGAAATACTTTGGAAGTGTTGGGTATTTCGTTCC 295 36 100.0 35 .................................... AAACTTGTCGGAATGCCAAACATAAGATTTAAGTG 224 36 97.2 35 .....................G.............. TTTGCGGGGTCTGACAATTCGTCTACCTTGCCGGT 153 36 88.9 0 ...........................A..T..A.T | A [124] ========== ====== ====== ====== ==================================== =================================== ================== 4 36 96.5 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : TTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTAGTATACTAAGATGATAAAGATGGATTCCTCG # Right flank : TGAAGAGAAGATTTATTTTAGCCCAAATTGTTTCGCACAAACGTGCAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTAGTTTGTTCAAATAAATGTGGGAACTCC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //