Array 1 105736-107159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWLM010000001.1 Bacteroides fragilis strain GB-124 Bacteroides_fragilis_GB124-contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 105736 47 95.7 29 ...A......A.................................... TTAAACAAACTTTCATATCAATCTAATGA 105812 47 100.0 30 ............................................... CGATCACGGGCGGTACAATTGACTTCGCGA 105889 47 97.9 29 ............................C.................. GTATATGAGATATCAATCCCGACAAAAGT 105965 47 100.0 30 ............................................... AAAGGTTTTCATTTGTAAGCCATTGTTTCT 106042 47 100.0 30 ............................................... GTCTTATACCTGACATTCAAATACATTTGT 106119 47 100.0 29 ............................................... TAAATCAGCGTTTATCAGTAATAGCGACA 106195 47 100.0 30 ............................................... AAGTATTACGATCTGAAGAATAACACGGAA 106272 47 100.0 30 ............................................... TATTTGCGAGAAAAGCAAGGATAGTAGATA 106349 47 100.0 29 ............................................... GTACTATTGACGTATCCCGCAACGTAACA 106425 47 100.0 29 ............................................... AAAATCGGCCGAACGGCTTAAGATAGTTA 106501 47 100.0 29 ............................................... AGCAACTTTATTGGAAATATGTTGGCCAA 106577 47 100.0 30 ............................................... GAAAATCGGCCGAACGGCTTAATATACTGA 106654 47 100.0 29 ............................................... TTATTTACGCTTATAAGAATTATAAACAG 106730 47 100.0 30 ............................................... ATCTTCCGGTGTGACTGCTGAGTGATAGCG 106807 47 100.0 29 ............................................... CGTTTATACACGCCTATCTGAGTCAAGGC 106883 47 100.0 30 ............................................... AGGTTACGCAGGTTTACCCAGTCTGCTGTG 106960 47 100.0 29 ............................................... ACCTTGATTATCATCAAATTGTTCTATTA 107036 47 100.0 30 ............................................... TCACTTTTGCTAATCATGAACAAGTTGGTT 107113 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGCTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 3345578-3344137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWLM010000001.1 Bacteroides fragilis strain GB-124 Bacteroides_fragilis_GB124-contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 3345577 35 100.0 34 ................................... TTAAGACTCCGAAGATTGACCGAGGCGGCTCGAT 3345508 35 100.0 35 ................................... ATTATAACTACTTTGAGTATACCGAAGAGTTTTAT 3345438 35 100.0 36 ................................... AACCCGACAGCTTTGCCACATCCGTTGCAATCCTTT 3345367 35 100.0 35 ................................... ATAAAGACTGGCAGGTAAGGAACGCTTTGGTTGAA 3345297 35 100.0 35 ................................... TTTACTACCTCATCGAGGCTAAACAGGGCGGCGAA 3345227 35 100.0 37 ................................... ACCATATCATTAATAAAGGATATGCATATTGATAAAC 3345155 35 100.0 37 ................................... CATCTATGACAACCCGTTCCAGCCGTAGTTTGAGATT 3345083 35 100.0 35 ................................... AAATTTAATGATGATTTGGTGTGGGTGGCACCTTT 3345013 35 100.0 38 ................................... AAATTGCGCAGAGTGGCGGATGTGTTCAGTGAAGGTTT 3344940 35 100.0 33 ................................... TATTATCATCTTGTACCTATGTAGAACCCGGAG 3344872 35 100.0 34 ................................... AAGAAAAGGAACAAGACTAAACTCTTCTACTAAC 3344803 35 100.0 34 ................................... AATATCATTGGCCTGCTTTTCTTAGGAGGCATCT 3344734 35 100.0 34 ................................... TCTGCCAGCAATAAAGGAATGGCAGATGATTATC 3344665 35 100.0 36 ................................... GCTGGAGCATTTGTCTCGTGAAGAGGCTGTAAAGGT 3344594 35 100.0 37 ................................... GGAACCGCATTTGAACGAGGAACAAAAAAACAAAAAT 3344522 35 100.0 36 ................................... GACATAGAGGAAATTAAATCAATCCTCTTCTAATCT 3344451 35 100.0 36 ................................... GGCATGTTGGTTTGGGGTATCTGCGGCAATGCCGGC 3344380 35 100.0 38 ................................... AGACGGAAACGAAATCCGTACAATGGAGTTAGAAGAAC 3344307 35 100.0 34 ................................... AATAGTAAGTACTTATAACAGGGATCCCTGTTGT 3344238 35 100.0 32 ................................... ATCAGAGCCTGACGAACAAATTCCCGATGAAG 3344171 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 21 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAATAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //