Array 1 1705541-1701249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021388.1 Bifidobacterium breve strain NRBB11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1705540 33 100.0 35 ................................. ATCGCCATGCGCAACGCCGGTCACACCACGCTCGG 1705472 33 100.0 35 ................................. CCACCATTGGACAAGAATGATTATCATCGGATGCG 1705404 33 100.0 34 ................................. AGCGCGACGTTGTTGAACTGGTTGCTGAACTTCA 1705337 33 100.0 32 ................................. AACAAGGCCATCATGGACTTGGGCATGAGCGA 1705272 33 100.0 36 ................................. AGCCACTTGAACCGTGACAACGCGATATTCAGCATT 1705203 33 100.0 35 ................................. CCCTCAACGCAGTATAACGCGCTCAACGTGACCGA 1705135 33 100.0 35 ................................. AACGTATATCAACAATTAAGTGACACCGACGAAGT 1705067 33 100.0 35 ................................. AGTATTTTTTGCGTCATGTCATCGGAACGTTTGAG 1704999 33 100.0 34 ................................. ACCTGCTTCTTGCCGGACACGCCGAACAGCGTGG 1704932 33 100.0 34 ................................. GCATTGTTCGCCGCCGCCGTCGCCGTGGTGATGT 1704865 33 100.0 34 ................................. GATATGAATGGCGTGCAAGCCATCCTCACCACGG 1704798 33 100.0 35 ................................. GCTTCGCCGGTCTGGTAGACGTTGGGCTGGATGGC 1704730 33 100.0 34 ................................. TATGATGCTGAAGAACGGCTATCAATGGACTTTT 1704663 33 100.0 34 ................................. ACGTAGGGGTTCCACCGTTTTCACGAGGTTTATA 1704596 33 100.0 34 ................................. TGGATGTCGCGGGAGAGCAGACCCTTGATGTTCG 1704529 33 100.0 34 ................................. TCATCATATTCGCGTAGAAACTGTCCGAATTTCG 1704462 33 100.0 34 ................................. GAGGATATCGCCCGCCTGCTGGGTAGCAGCAGCG 1704395 33 100.0 33 ................................. CGGTCGGCGTTGCGGCCATCCATTATTCGATCC 1704329 33 100.0 33 ................................. ATGGCGCATGCCGAACGTATCGTAACCGATACC 1704263 33 100.0 33 ................................. ATGGCGCATGCCGAACGTATCGTAACCGATACC 1704197 33 100.0 33 ................................. TCGGCATAATGCTGAGAGGGGCTTTTGAGTCTC 1704131 33 100.0 33 ................................. CATACTTACAAGGGGGGGCTGTGGCGAAACGCA 1704065 33 100.0 34 ................................. ATTCACGAGATGGAACAGCAGGGCGTGGCAACCT 1703998 33 100.0 36 ................................. TGGAGGTTCGGCAGTCAAAACTACCCCGGCAGTCAC 1703929 33 100.0 35 ................................. CACCATAACGAAGCCATCGCAATAGCGTTGGTATT 1703861 33 100.0 36 ................................. CGCTAAATAACAGTAAAGGAGTAGACCAATGTCAAC 1703792 33 100.0 35 ................................. AAGAAGGAGAATCTCTATTGGGGCAGCACCGTACA 1703724 33 100.0 34 ................................. GATGCGCAGGTGTCCAACGTGATTAATCGGGGCA 1703657 33 100.0 35 ................................. CGGTAAACTATGAGTCTTATGCGTTGCGCAAGTCA 1703589 33 100.0 35 ................................. ATATATATTCCGTTTTCGTTGTATCCGAATTGTAT 1703521 33 100.0 35 ................................. CGCCAGAACGTGGCGAAAGAAACCGGCAAAGCAGT 1703453 33 100.0 35 ................................. CCCGACAACATGCGCTACCTTGGCGGCGAGGTCAC 1703385 33 100.0 34 ................................. CTCGTCCGAGATGGGGTATCCGAGGTCTTCGAGG 1703318 33 100.0 32 ................................. TGCCACGGGTAGAGATGCACGTGGAGGAACTT 1703253 33 100.0 33 ................................. AACGATTCGAGTTCGGGGTCGGCCATCTCGTCG 1703187 33 100.0 34 ................................. TACGCATGTGTATGCGGTGGTCATTTCGGTTGCT 1703120 33 100.0 35 ................................. ACCACCGATGCGGGCACCAGCATCAATGTCGTGAC 1703052 33 100.0 33 ................................. TATGTCCAGCTCATGCTCATGCTCAAATACGCC 1702986 33 100.0 35 ................................. ATCGAATCACTCACCCGCACCGACAACGGAAAGGA 1702918 33 100.0 34 ................................. AGACTGTTTATCGCGCGTCTCACGCGCTTGCGTT 1702851 33 100.0 33 ................................. TCTCGGACTCGCTGGCACGCGCTAACGCGGCCA 1702785 33 100.0 37 ................................. TGATACGGCGTATTGACAATATCATGCGAAAAATCAA 1702715 33 100.0 36 ................................. ACATTATCCACCGTAATGGCGGAATCAAGATGTATC 1702646 33 100.0 35 ................................. AAGAAGCTGTACGGGTGACGTTTCGGTGAGCGGTG 1702578 33 100.0 38 ................................. TCGAACCTGCCGTGGGTCGGATCGTAGTCGTCGGACAG 1702507 33 100.0 36 ................................. ACTTCGGCGCGCGCCCATTCGAGCGTGTGCGTGCCT 1702438 33 100.0 36 ................................. CCTGATTATGAATTTCGGACAACCAATAAAATAGCC 1702369 33 100.0 37 ................................. ATCCCGGTCATCGAAAAAGCGGTGGAACATATCGCCG 1702299 33 100.0 35 ................................. AACGCGACCGTGCGCACCATCATCTACGTCGTGAC 1702231 33 100.0 32 ................................. GTCAAAATGTTGCGGGCGGACACCGATTACAG 1702166 33 100.0 33 ................................. CTTGAAATCCGGAGTCAACACGTTGTTGTCATT 1702100 33 100.0 37 ................................. GAATACGGCAAGGACCTCACCCAAATCAAACGCGACC 1702030 33 100.0 33 ................................. TCGATACTCCGATTACACGCGACAGCGTAACAC 1701964 33 100.0 35 ................................. ACCGGCCCCATCCAAGGCATGGACGAAACCACCCA 1701896 33 100.0 36 ................................. AAACTCGGCAGCAATGCCGCACCGTGGGGCACGCGC 1701827 33 100.0 36 ................................. GCCTACCTGAGCGAGGACACCGCAGGACGGCAGATG 1701758 33 100.0 36 ................................. ATGGTGATGATGATTCCGAAGAACATGCTGATGACC 1701689 33 100.0 35 ................................. ATCGGTGTTGCAGTCTATCCGTGACCATATCGCCA 1701621 33 100.0 34 ................................. AAGCCATTGAACGTCAACGGCGAGCCAGTGCCAG 1701554 33 100.0 35 ................................. GATTCCCGTGTCTCGGGCCGTGCGCCCTGCGCCAT 1701486 33 100.0 36 ................................. CATTGTGAGTGTAATCGGCAGTGTTGGTTTTCCCAT 1701417 33 100.0 35 ................................. CAAGTTCGTGAAAACATTACAAGCGGATACCGATT 1701349 33 100.0 35 ................................. CCGATTCCATCCCTGAGGGTATCGCGCGCGACGCC 1701281 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 64 33 100.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : AGTGGATGTAGCGGACGCCACTTCCGGCTGCGGCCTGTGTCTGTTCAATAGAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGAGCGGCAGGTTTTAGTCCATTTCAGCGTGTGGCGAGAAATGAACACCGGCCCGTCCTGCCCGTACTAGTTTCCCGAGTCGGAAGCAAACCATTCGGTTTCTCGGGAAAGGAAAGGAATGACGGTACCGGTGTCCGTACAACAACGTATCAGGGTGCTTGACGCGCATGGCGTGTCATGGAGAAGCATCGCAAAAGAGGTGGGCGTGGCCCGCGACACGGTCGCGAAATACGCCGGGAGGGAGGATTGCTCTCCCAAGCCGGAGCACTCCGCATCGAGGCCGTCGAAGCTCGACCCGTTCAAGGCGACGGTCGACGGGTGGCTGGAGGCGGACCGGTTCATGCCGCGCAAGCAGCGGCACACCGCCAAGCGCGTGTACGACCGGCTCGTTTCGGAGAGGGGCTACGGGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //