Array 1 1291164-1290604 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023065.1 Nitratiruptor sp. YY09-18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1291163 36 100.0 45 .................................... GCGAACACTTACATTCCCCATATATTTACCTCCTTCATAGACCAT 1291082 36 97.2 32 ........T........................... CGCAATCTTTGCGCAGTACGCAATGATCATAT 1291014 36 100.0 40 .................................... TCATCGACTTTAAGGTGTTTTTCACTGTACGGGTTGAGCT 1290938 36 100.0 40 .................................... TCATCGACTTTAAGGTGTTTTTCACTGTACGGGTTGAGCT 1290862 36 100.0 41 .................................... TTCCATCTCTTCTAAATAAGCCTTCTTTTACCATTGTGAAC 1290785 36 100.0 35 .................................... GCCGTAACAAGCTTTGGCTTGCAATGGCCACGAAG 1290714 36 100.0 40 .................................... CGCACTCCGTTGCCGTCTTTTTTGTCGAATCCCAATGAAA 1290638 35 83.3 0 .........................T.-.GC...GG | ========== ====== ====== ====== ==================================== ============================================= ================== 8 36 97.6 39 ATTACAACCATGACCCGATTTTAAGGGGATTGAGAC # Left flank : TTTTAGAGTCTATCTTATCGATGTTCATGGATATATATTAGGTAGAGTAGTAAACTATGCAAAAAAATGATTATCTTGTTTGCTACGATATAAGCGATCCAAAAAGATTAAGAAGAGTTGCAAGATATTTGGAAGGGGAGTGTATAAGGATCCAGTACTCTGTATTTATTGCAAAAAGTGTGACAAAAGAGAGAATCTATACCATTGCAGATCGATTAAATGAACTTATAGATTCGAAAGAGGATGATGTGAGAATCTATAAAATCAAAGATAAAGGGATAGCAATGGGAGTAGCTTTTGATTTAGATGAAATATTTGTTATTCGATAAATCTCATTTTATTAAAGTTACATTTAAGTATAAAATGAAACTTAAAGTGGCCATTTTTAGGGGCTTTAATATTTTAGTAGAAGCGAAATATGGGTACAAAAGCAAACTTTAAGAAATCTATTGTTACACTAGATTATTGGTTTTATGGGTATTTGAAAACTTATTGTTGCT # Right flank : CAACGTGTAGCTTTGAGCAAGCAAACTGCTTTGCTTGCGTCCCGAAGCGAAAGCTGTGAGTATATGTGAGTCCTAAAATCAAAAATTTTAGTGACGAACATACGAACGGCTGGTTTACCTTGAAAAAAAATCAAATGAGCAAAGCGAATGAAGATTTTTGGTTAGCTTACTTCAAGGGGATCTTAAAGATAACCACAAATCTTGCATTATTGCATAATGAAGATTTGCTGCGCTGTTGAAGTAGGAAAAGTACGACCGGCTGCCATTGTTTCTGATACTGATTTAAATAAAATTTTAGATCTTATAATAGTTGTTGCTTTGACTACAAACCTCATCGATAATGTTGAACCTCTTCATATAAGAATAACAAAAAGGGATACTCTCAAAAAAGAAAGCGATTTTATGGTAGAGCAAATACGAGTAGTTGCAAAAGATAGAATATATGAAAAAATAGCTACACTTACAATAAAAGAGGTTGCAAAAGTTGATTATGGCTTAAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAACCATGACCCGATTTTAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1306598-1306871 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023065.1 Nitratiruptor sp. YY09-18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================== ================== 1306598 32 96.9 47 ......................T......... GAGACATTAACTTCTATTGTAGGTGATGGAAAAAATATATAGTTGGG 1306677 32 100.0 48 ................................ GAGACCTTTAAGATAAAGCTCTCTTTTTTCTGCATTGCTCATTGTCGC 1306757 32 100.0 51 ................................ GAGACACTCTTCTATCTATATCAATCATCTTAACCTCCTTAAAATTTAAAA 1306840 32 96.9 0 ......................T......... | ========== ====== ====== ====== ================================ =================================================== ================== 4 32 98.4 49 ATTTACCTATTGGACCCGATCTGAAGGGGATT # Left flank : GGCAAAACTACCTATTTAAATCTTATCCATTTTGAAATGAACGCACTCAAAAAAGCTATCGAAAATGAAGATCCACATCACACATTTTTTATAGCAAAATATTAAAAACGATGTTAGAACTTTTTATTTAAAATTGGTTTCAGTCTAAAACTAAAAACTCCCATTTCATGGAGTTATTATTTTTTCTTATAGTTCTAACTTCAGAGATTTTTAAAATTCTAAAAAGGAGATATTAGAACTTTTAGCTCTTTTTAAGTTTGGGAAGTACCATTTTACGGTCTTCTTTTTTTGCAAAGTTCTAACATCGCATTTTTAACACATAATTTTTTTCGATGTTAGAACTTTTTTGAAGTCAAAAATCCCCTATTGAAGGGAATTTAAGTTAAAATTAAGCACTTTTTGCATATGATATTTGCATAGATGTTAGAACTTTTTTGGATATTTGAAAACTCGGTTGTTTTTAAGAAGAAGTCTTACTTATAAGTCTCATTGTATGGATT # Right flank : TTCGGTAACCAGGCGTAGGCTATGCTCGTTTCACTCGCATAAACGCCTCGCCGTGCGAGCCTAAAAAAGCCAAGCAGTTGGCTTTTTCTTCACGGCTCTCCCCTATTGGACCCGATTTGAAGTGAGCGAGGGCAAAACGCAGTTTTAGGACAACAACTGCTTGTTGTCCGTACCTGAGCGAAATCTGCGAGTATATGTGAGTCCTAAAATCAAGGATTTTAGTGACAAACATACAAGCAGATGGTTTACTTTGAAATAAATGAAGTTGAGCGAAGCGAAACAAGTTTATGGTTAAATTGCAAGCCAAAGGCTTGAGAAAGCAAACTGCTTTGCTTTCGTCACGAAGCGAAAGTCGTGAGTATATGCGAAGCCAAAATTCAAGGAATTTTGTGTCTGAGCATATGAGCGGCTCGTTTACCTTGAAGCAAACGAAGTTGTGCGAAGCGAAACAAGTTTGCGGTTACTGCTTTATTTTAAAAATTTCAATAACCAGGCGTAGG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.14, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACCTATTGGACCCGATCTGAAGGGGATT # Alternate repeat : ATTTACCTATTGGACCCGATCTTAAGGGGATT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 1374454-1375317 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023065.1 Nitratiruptor sp. YY09-18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================== ================== 1374454 36 100.0 30 .................................... ATAAGTAAATTCAATCAATTCATACTCCTT 1374520 36 100.0 31 .................................... TACGCAAGCCCCAATACCAATATCCCTATGA 1374587 36 100.0 30 .................................... GGTCTATGCAGTCCTATGACGATATCTGCA 1374653 36 100.0 30 .................................... CATATAGTCTTTGCTCACACTCACACCATA 1374719 36 100.0 30 .................................... GATAGAGACTTTTCCACCAATTTGCATCAT 1374785 36 100.0 30 .................................... TAGGTTCAAGTCCATATGCTCGAAGTTTTA 1374851 36 100.0 30 .................................... TAGTCTCGCTAACTCTTCCTTGAGAAGAGT 1374917 36 100.0 30 .................................... GAAGATGATGAAGTGGAGTTTGTAAAGTTC 1374983 36 100.0 30 .................................... AGGAGAAAGCGAGATTTTATGCAAATAGAA 1375049 36 100.0 30 .................................... AAAAATGGAATGTCTATTCCGAGAAGTTTT 1375115 36 100.0 30 .................................... AATCTATCGTCCCACTAACAACAGATTTGA 1375181 36 100.0 63 .................................... TATTAAATTTTCATTAATTTAAAGAATGTTTTAAATATTGTCAAATTATATTTTTTTTGTTAT 1375280 36 88.9 0 .C.T....T..........................T | AC [1375302] ========== ====== ====== ====== ==================================== =============================================================== ================== 13 36 99.1 33 ATTGTAACAGGGTTGGGTTTAGAGGGGTCTTAAAAC # Left flank : AGGGTATTAATGATAAACCACAAGAGTTTGTAGCACTCAATGAAGTCTTGCAACAGATCAAGCCAGATCGTATCGATATTGGTACCATAGACCGTCCTCCAGCATACAAAGTAGCACCTGTAAGCTATGAAAAGCTCTATGAACTCTCAAAACATATCAAAAATCTTCCAGTTACTATCGTCTCAAGAAAAAAAGAGCATAGCTATCAACTGCATCTTAGCAAAGATGAGCTTATTGATCTCCTTACACATAGACCATTAACACAAGAAGATATAGATACACTTTTTGATGAAGAAACTATCAAACTTGTTAGAAAACTTCTCAAAGATAAAGCTATTACAAAGCGCAATGTTGGCAATGTAACTTTCTTTGATGCAACAGTCCATACAATTTCAAAATAGTATTTCTAAGTCGACTGATAAATAATATTTTATTACATTTATAGGTTGGGTTTAGAGGGGTCTTAAAACCCTTACATATAGTTATCGCCGCAGTCTCGC # Right flank : TCGAGAACTGTTACTACAGTTCCATTGTAGGGCCCGTTTGCGGACGGGCCTCTGGATGATTTAAAAATCAAAAAGTAATTGTTGTACAATCTCTTCTTGTGAGGATTGCTCGCCAACAACTATTTCCATTTTTCCAAATTGTGCATCTGTCATTAAAAACATTCTAACATTTCCTTTTTTTATATTAATCTTTAGAAAATCTTTTAATCGTTTCTTTCCATAGTTAGCAGATTGCAACGAATTAAAAACTTTTCCATAGACTGAATATTGCAACCGTATATACCCTTCTTTATCAAGATAATTAAAAAGCCATCTATATCGCTTACGATCTTTTTTGGATGTTGTTGGGAGGTCGAACATTACTATGAGCCACATTATCTTAAAAGCACTCACTCAGAGCCTCAAAATCTATGGTAGGAAAATTAATAAACTCGATTTTTCTATTTAATATCGCAGCTTTGAATCTTTGTATATACCGCACCGACGTTGTTCTCATTGTA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAACAGGGTTGGGTTTAGAGGGGTCTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //