Array 1 29612-30719 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QMHS01000009.1 Staphylococcus pseudintermedius strain MI 14-3131 Contig_9, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	====================================	======================================	==================
     29612	    36	 100.0	    36	....................................	ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG  	
     29684	    36	 100.0	    34	....................................	ACTAGATACCCAGAACAAAATAGGTCTAACGAAA    	
     29754	    36	 100.0	    36	....................................	TCTATAAGTTCATTAATTCCGATACCTAGATTATCT  	
     29826	    36	 100.0	    34	....................................	AATTTTCTAATTCTATAAGTTCATTAATTCCGAT    	
     29896	    36	 100.0	    36	....................................	TATACTATTTACATAATTTTTTATGTGTCTGTCTAC  	
     29968	    36	 100.0	    37	....................................	TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 	
     30041	    36	 100.0	    35	....................................	CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA   	
     30112	    36	 100.0	    38	....................................	TCTGTAATGTATTCATTTAATGTAATCATAATTTTTTC	
     30186	    36	 100.0	    37	....................................	TAGACCATTTACCTCATTATATTTATAGTCTTTATTA 	
     30259	    36	 100.0	    35	....................................	TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT   	
     30330	    36	 100.0	    36	....................................	ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA  	
     30402	    36	 100.0	    36	....................................	ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA  	
     30474	    36	 100.0	    35	....................................	AAGTTAACGGCATTACCTAATAAAAATATTTTAGG   	
     30545	    36	  97.2	    33	...................................C	TCATCTTTCATGTCACTGATTAATTCATTTGTA     	
     30614	    36	  97.2	    35	...................................C	GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT   	
     30685	    35	  91.7	     0	............T.................-...G.	|                                     	
==========	======	======	======	====================================	======================================	==================
        16	    36	  99.1	    36	GATCGATAACTACCCCGAATAACAGGGGACGAGAAT	                                      	       

# Left flank :   TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT
# Right flank :  TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GATCGATAACTACCCCGAATAACAGGGGACGAGAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.80,-7.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.27   Confidence: MEDIUM] 

# Array family : NA
//