Array 1 14501-16821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYS010000016.1 Clostridium botulinum C strain IZSVe-TV_6433_4_13 NODE_16_length_58793_cov_172.576_ID_47386, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 14501 30 100.0 35 .............................. AGGTAAAAAACACATCTTAAACCGTTGATATATAA 14566 30 100.0 35 .............................. TCCATATATCTCCTTCATTCATTTTTCCTATATCC 14631 30 100.0 34 .............................. TGTCTAGCGAAGTTTTATAATGCATGGTTTTTCC 14695 30 100.0 34 .............................. TCAAATCAAATCGATATTGTTTCTAAAGTATCAA 14759 30 100.0 34 .............................. TAAATCTTTACCCCACTGGAGCGTGCACCTATGT 14823 30 100.0 37 .............................. GAAGGAAATAAGATACAGGATTTTCCTTCACAAGGGG 14890 30 100.0 36 .............................. TTCAAACACTCCTTTAATTAGAAAAGGAGAAATAAT 14956 30 100.0 35 .............................. TTGTAAATGATGATGTATTATATTCAGAGATTACC 15021 30 100.0 35 .............................. GATATGGGAGTCGGAAAACACGCCCTTGTGATTGA 15086 30 100.0 34 .............................. TACTCTCTATTAATTCATCACTATGCTTTTTCAT 15150 30 100.0 37 .............................. TGTTGGCTATTTTGACAGAGCAGTTAAAAGTTCCGAA 15217 30 100.0 35 .............................. GTTATATATTTTATAATTTCTCTTTCTGCTTCTCC 15282 30 100.0 35 .............................. TAACGTAGATAAAGGTATGCCTGATGCACAATTTA 15347 30 100.0 36 .............................. TTCATAAAATCTTCATAAAAATGAACTAAAAACTGT 15413 30 100.0 36 .............................. TTTTCTAAGATTGATATTTGGCTGTTATTTTCCATA 15479 30 100.0 35 .............................. ATTTCTATAGATAAACTAGCTATATCTTTTTTAAG 15544 30 100.0 37 .............................. CAGAATTAAAAGGTGCGTATATTAAAGTAGGATTAAC 15611 30 100.0 35 .............................. TCTCCAAAAGTAGTGCTAGTTATTGGAACGTTCCC 15676 30 100.0 35 .............................. TTTTTGGTAGTTGTTCTTTCTTTACCTTTCCTTCT 15741 30 100.0 36 .............................. CTGTTTTTATGTCAATTCCCAATCTTTCTAGCACAA 15807 30 100.0 36 .............................. TTATAAGTAAAATTTTTATAAAAATTTAATATTTCT 15873 30 100.0 35 .............................. ATTTAAAGATGAAGATTACTATTGTCACAAATGTG 15938 30 100.0 36 .............................. TGACCACATGAAAACGTACCACTATAACCTGCCATT 16004 30 100.0 36 .............................. TAAGCATAGTAAGGGAGAAAAAGCAGGGGAATCAAT 16070 30 100.0 36 .............................. TATATTTTTATCCATCTATAGACCGTTGCTCTTCCA 16136 30 100.0 35 .............................. AGGTAATGAGGTAAGTCCTTTGTACTAACCCCCAG 16201 30 100.0 36 .............................. TTATAAGTAAAATTTTTATAAAAATTTAATATTTCT 16267 30 100.0 36 .............................. TTGTATAAATATATAGCTTTTTTCATTTTCAAGCAC 16333 30 100.0 34 .............................. TCTATAAAGTTATATTCTTTAGCTTTTTGAGCAT 16397 30 100.0 36 .............................. AAAAAAATGGACTGAACTTTGGAAAGACTGTTTAAA 16463 30 100.0 37 .............................. GCGCATATTCCTATTGTATTTGTATTATGTCCTTTGC 16530 30 100.0 35 .............................. AACTTATCCTTATCTTGTCCATAATCCATATCTAA 16595 30 100.0 37 .............................. AAAGGAGATTAATTTTTATGGATCTATTTGCATTAGA 16662 30 100.0 35 .............................. TTTTTATATTTGTTTCTAATAGCATCTGCTGCTAA 16727 30 100.0 35 .............................. AGTATTACATTAAAAGATACTACCGTTAGTTCTGC 16792 30 90.0 0 ....................C...C.T... | ========== ====== ====== ====== ============================== ===================================== ================== 36 30 99.7 35 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTATTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTCAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATAAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : TAAAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCAGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTCTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTGTTAGTTATTATAGTTAAATTTTTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 22024-22549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYS010000018.1 Clostridium botulinum C strain IZSVe-TV_6433_4_13 NODE_18_length_57907_cov_115.514_ID_47390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 22024 29 100.0 37 ............................. AATTGAAGATTTTATTCAAAGATTAACACAAATTCAT 22090 29 100.0 35 ............................. CATTAAATAGGACCTGTGAAAATAGAGGAGATCAT 22154 29 100.0 37 ............................. CTCTTTCCACTTATTTAAATTATTTAATTCCTTGCTT 22220 29 100.0 36 ............................. CGCAGCTATATTAAACAACTAATCGAAAAGGATATT 22285 29 100.0 36 ............................. CTAGCCTTCATTCTGTGCAGAGTTTATAAAACTAAT 22350 29 100.0 35 ............................. CGTAGAAATTGTATCTGCATAAGCAATATTATTAG 22414 29 100.0 13 ............................. CGAGCGGTAAACG Deletion [22456] 22456 29 93.1 37 .....C..........A............ AATTCGAAATATCGGAATATGTCTAATATCTCGAACA 22522 28 75.9 0 .............T....-.T.AA..C.T | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.6 33 GTTGAGAATCAACAAAGGATATGTTTAAG # Left flank : AATATACTTAATAAAGATAAAGAATATGAGTTTACTGTTGAGGATGAAGTTATAGCATATGACCAGATTAAAAAACTTTATGAGGCTATGGATAAACTGGAACCATTGGAAAGGGAAATTATTAGCAGATACTATATTAATAATGAAAAATTTAAGGATATTGCAGAAGATAAAAAGCTTTTATATGATAGGACTATTTATTTGAGGAGGAGAGCCATTAGGAAACTTAGAGGGATCATGGAAAAAAAACAATAAATTTAAAATATTATCATATAAAAATTGAATAAATATAATCGTATGTGTTAAAAATATAAATAAAATTATTACCAACCATAAAGGTCGACTTAGCGTCCTAAAATTGAGTAGTACCAATAAGTCTAATAAGATTAGCATGGCAACTCTCAGTAAGCCTCAATTTGATTGGGAAGCTTTGTGCAGATGCTAGTAATAGCAAGGCGTACAATGATATATCCATATTTAAAAATGGCTTAGATACAGAG # Right flank : TATAATAAATAAGTTTAAAATTAGTGTTTATTGGAAATATTATAAATATATATAATATTTTAAGTAAGGAAGATAAAACATGAATAAATGTATAAAAGTATCCATAAAGAATTGTAAGGAACTAGATTATAAAGTTATGAGTGAAAAATTAAGAAATATACAATACTTAACATGTAAAGCTAGTAATAAAGCCATGCAAATGTATTATATGTGGGAGAATCAGAAAATAGATATTAAGAATAAAACAGGAGAATATCCTAATGATAAAGAATTATTTGGAAAAACCTATAGAAATGTAGTTGAAGGTGAAATGAAAACTATAATGAATACCATAAATACATCTAATGTAGGTCAAACCAATGCAATTATAATGAAAAAGTGGAATACTGATAAAAAAGAAGTTCTATCATATCAAAAATCTTTACCTAATTTTAAATTAAATATGCCTATATACATAAAAAATAAAAGCTTTTCAATAGTAAAAGGTACAAGTGGATATG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCAACAAAGGATATGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 30373-31060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYS010000018.1 Clostridium botulinum C strain IZSVe-TV_6433_4_13 NODE_18_length_57907_cov_115.514_ID_47390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 30373 29 100.0 36 ............................. GTTATTTAAGATACCTTTTACATACTCAATGTTTCT 30438 29 100.0 38 ............................. TCGAGACTGGAGTGGTAAAGTTGCTTTAGTAGATACTA 30505 29 100.0 37 ............................. AAATTAAATGTTGAAAATTCTTGGTTAACGGATTCAT 30571 29 100.0 36 ............................. TGAAAATTGATATTGAATATATAAAAGATAAAGTTA 30636 29 100.0 38 ............................. ATTAAAATTGAAGTACGACTTGTACTAACTGCATCTGC 30703 29 100.0 36 ............................. TGAAAATTGATATTGAATATATAAAAGATAAAGTTA 30768 29 100.0 37 ............................. CCTAAAAAACAAAAACACCCTAGCCAATAGGCTTAGA 30834 29 100.0 38 ............................. AAAAGGTTAAAATCTGCACTTATAATTCTAATTGGTAC 30901 29 100.0 37 ............................. TATCCGAATTCAAAGTCGCTTTGTATTCTATCAGCCA 30967 29 100.0 36 ............................. TCTTTCAATATCTTCAACTATATTTGCAGTAGGATC 31032 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.7 37 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : TGAGCATAGCAATAAATTTTGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTGCAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAAATATCCATAATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 102318-101956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYS010000002.1 Clostridium botulinum C strain IZSVe-TV_6433_4_13 NODE_2_length_198241_cov_53.801_ID_47358, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 102317 29 100.0 38 ............................. TTTAGTAAATCTTTTAATAAAACTTGTCCTGAAGGTAA 102250 29 100.0 37 ............................. GCAATTTTTATAATTAATTGTTGTGTAGCTGGACTTA 102184 29 96.6 39 ................G............ TTGCATTTGAATTGCATTTAAATTATCTTGAGATTTTGT 102116 29 96.6 36 .........G................... ACCCAATATTCATATAGTAGGTTAAGGTCTTAAATT 102051 29 96.6 38 ................G............ AAAGTATAATAATATAAACTAGCACACGTAAATTGGTA 101984 29 89.7 0 .........G.............TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 96.6 38 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : TGGCTGGGATATTGAAGATTATTTAGAAGTTGGTAAGTGGGAATTAGTTTAGAATCTTAAAATATTAAGAATGTGCTTGATTAGGGGGATTAAGAATGGAAAAATATAAATATGTTATAAAAGTTGGATACAATAAGTATTTGCAGTTTATAGATGACATAGAAGATTATTGGCTAGTTAATAATAAGAAATTGGCTAAGGTATTAAGTGAAGAATGGTATGAGAAAAGAGTTGAGATATTAGATAAATTAATAGATTTAGGATTAACTATACCTCATTTTGAGAGTGCTTAAAGGTAAAAACAAATAGAGATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAAAGTGATTGTAAGGTAGTTATATCAATACGCTTAGCTATTTATTATAAAAAACGGCTCACTGCAAAAACACACTATTTATTTGAAGTTTTAATGGTCAAAATATGGGATTATATAGTATAATAGAGATATGCAAAGAAAAATAGA # Right flank : AGGATTAACTTTAAAAAGTTAGTCCTCTTTTTGAATAAAAAATCACAAATATTAATAACTCTGTGGTAATTAGTGAAGAATTATTATATAATAGCATTAAAAGGTAAATTTTATTTATAACTGATTGGAGATGAAAATATGGAGATATTACTCGCGATAATGGCATGTATAGTTGGATTGTTTATTTATATAATCGTTAAGGATGAAAAAAGAATCAATGCTGAAAAAAATGAATATGATATAAAAATAAATTGGCTTTGTGATTACATTGGAGGTATACCGTTATTTGATGAGAATAAAAATAATATAGGCAAACAAATGGATGTGCAAGTTAGGGGTAAAACTAATAGCTTATATATCAAAAGCTTATCTAACGCAAATGAAATAGATATATCTATTAATAATATAACAAATATGGAATCTAAAACTAAAGAGCAAATAATAAGTAAACAAGTAAGTCCATCATTGACTAAAATATTAACTTTTGGGGTATTTTCAAT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTAAACTATGTTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 176103-176785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYS010000002.1 Clostridium botulinum C strain IZSVe-TV_6433_4_13 NODE_2_length_198241_cov_53.801_ID_47358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 176103 29 100.0 37 ............................. CTTGAAATTATGTGCTAAAACAATGGGTAAAATGTTT 176169 29 100.0 36 ............................. TGTCTGAGGTTTTCTACGTAATCACGTAGCTGTTCT 176234 29 100.0 36 ............................. TCTTTAACTGTTACAGTCATGTCATTGTTATCTACA 176299 29 100.0 40 ............................. TACTTAAAATTAACCATTACAACATCTCTAGTAGTTTCAC 176368 29 100.0 35 ............................. GTTAACTCTGCTATTTCTCTATTTGTAAAGTTTAG 176432 29 100.0 36 ............................. TCTTTCATCTTTTTTAGCAATCCAGTGTGTTGCTTC 176497 29 100.0 36 ............................. TTTCTATATAGACTATTATATATTTTTACTTTATCT 176562 29 96.6 37 .........G................... CTCATTCAGTTCACCTCTTGTTATAATGTTAAACTTT 176628 29 96.6 35 .........G................... TCTTCTAACATTTTAATTGCTTCCCATGTTTTATA 176692 29 100.0 36 ............................. ACAGTAAACCCCTTTGGTACTTCTGTATTTTTATCT 176757 29 82.8 0 ...C...........CG...A.......T | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 97.8 36 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : CTAACTGATACTATGCCTAAGGTTGTTATATTAGGTGAATATAAGTGGGGAAATAATGTGTTCCAAGGATTAATAAATAAAGATGGAATAAATATAGATGGACTTAAAGAAGTAATAGAGGAATACGAAGATTTTAGAAATAGTAAGATTTGGATAGGGGTTAGTAGTAGAATATTAAATGAAAATTTTCAAGGATTAAAGGAAAAGCTTGAAGAGGAACTGCAAGATTATGATGATGTTGAAATAGGAAGTGTGAAGAGTGCTTTTGATGGATATTTAAAATATTTAGAAAAAACGATGTAATATTATAAATTTTGCAGTGAACCTCTAGTAATGTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATGGTTGTAGAGATTTACTATAAAAAATGGTTCACTGCAAAAACACACTATTTATTTGAATTTTTAATGGTCAAAGTATGGGATTATATAGTATAATAGAGATATGAAAAGAAAAATAGG # Right flank : TAGATAATAAAATAAATAATCGTATAAAAAGAAAGGAAATAAAATATGAATGACTTAAGTGATAAATTAAAGAAATATAAAGCAAAATCAGATGATACTACTATATGTAAACATAATAATGATTTGTTTGTAGCTTTAGAACAATTATTAAATATACATTATATATCTGACGAATTAAAATCTTCGCTAAGAAAATGTATAAGTTATCATGATGTTGGAAAAGTTGTTGATGATTTTCAAAATAACATAGAATGTAAACATAGAAAGATTAGACATGAAATATTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATCAAGATAGTTTAAATGAAGTAAAAAATAAATTAAATATAGAGACAGAAGATATAACAGAATATTTAAAGAAAATATGTAGAGGTAGCAGAGAAAACCATAAAAAATTACATGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTGAACTATATTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 179044-179732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYS010000002.1 Clostridium botulinum C strain IZSVe-TV_6433_4_13 NODE_2_length_198241_cov_53.801_ID_47358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 179044 29 100.0 35 ............................. ATGATGGAAGTAACTTAGATAGTTACGCGTCATAC 179108 29 100.0 38 ............................. TAAAATTCATATAAAACGCCTCCTTTATGCTACATTTA 179175 29 100.0 35 ............................. TCAGGAAACATCAAGTATGATAAATCTAAAAGTAG 179239 29 100.0 38 ............................. GGTATCCAGCTTTTTGTGCTTGTTTTCTAAAGTCTTTT 179306 29 100.0 38 ............................. TTAAAATGGAAAAGCCCAGAAGAACTTGAAAACAAAAT 179373 29 100.0 36 ............................. GCAGTAGAGAAACTATTTGGCGCCATTCTTATTCTT 179438 29 100.0 42 ............................. TATGTCTAAAGATTGAAGTTGTTCATTTATAGCATTTTCCTG 179509 29 100.0 35 ............................. GTAACCAGCAGGTGCATCACCTAACCAACCATTTA 179573 29 100.0 36 ............................. CTTGATACATGGTAGCTAAGTTATTCCAATAGTCTG 179638 29 96.6 37 ............................C AGTTACAAAATATGCAATTTTCATCGGTACTATTTCT 179704 29 89.7 0 .........G......G...........T | ========== ====== ====== ====== ============================= ========================================== ================== 11 29 98.8 37 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : ATAAGTATAAATCACAAATACAATTTATAATTAATAGTATTAGAGTGGGATATTATAATAAAAATGCTTCTGAAGAAATGCTAAGCAATGATGATACAGTATCAGTATTGCCTACTAATTTATTAAGCGAATATGCTAAATTAAGAGAAGAAAAAAGATATATAGAAGCCAACGAATTATTTGTAAATGCTAAAAAATATATATCAAAATATAATAAAGAGTTTAAAATTTATATAACATATAGTGTATACGATTGTAGAGGATTAGTTTATGAAGAAATTGATATAAATAACCAAATAATTTAATATCTTATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATATGTCTAGCTATTTATTATAAAAAATGGCTCACTGCAAAATTTAATGATTTTATACTAAAAATAAGATGAAAAATATGGAGTGATATAGTATAATAAAGATATGAAAAGAAAAATAGG # Right flank : TGAGTCATTAAAATCTATCTTTTATGATAATGGAAATTAAATTAAAGAATTTCAAAAATAACCGTTGACATAAATGGAAAACAGTAGTAGAATAATAAATGTGGAAAGAAAATATAAAGTTAGTATGGGTTGGAACATTTTGTTCAAGCCCTTTACATAAAAATATTAACAAAATTAAATTAAGTAAGAGGAGGAATTATATGACGAATAGTTTAATGATTTTTGAAGGTTCAGAGTTAGAAATTTTAACAAAAGAGGATGTAAATTTTGAGTTTGAAGGCACAGTTTTATTCAATGGGAAACAAGTATGTGAGATATTAGAGTATAATATAAACAACTACGCTAGAGAAATTACTAAGTATTGTGATGAAGAAAATGTTCAAGTAATTATAAAAGAAAGACTCAGTTCCAAAATGGAAGAGAGTTTAAAACTCAATCCGAATATCATAACACTGGGGCAAAGAGGAACAAAGTTTATAAATGAAGATGGTGTTTTTGAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //