Array 1 1108709-1109398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041354.1 Pseudomonas aeruginosa strain AZPAE15042 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1108709 28 100.0 32 ............................ TTGCGATCAAGGGGCTGCAACACGGCCTTGCG 1108769 28 100.0 32 ............................ AAGCTCACCGGCCCGGCGGAACTGCTCGCCGA 1108829 28 100.0 32 ............................ ACAAGTAACCCACCCGAACCCATCAGGAGAGC 1108889 28 100.0 32 ............................ CTGAACCCGATCCTTGAATGCGAGCTGCCGAT 1108949 28 100.0 32 ............................ TTGACAACATGGCGGTGCTGGCGGAAACCGTT 1109009 28 100.0 32 ............................ TTGGTCTCAATGATCATTTTCACGCGGCGGTC 1109069 28 100.0 33 ............................ AGAATAACGCCCACCACTTGTGACAGGTAACGG 1109130 28 100.0 32 ............................ AGAGGAAGCCGAATGCGCCCTTGGCGGTATCG 1109190 28 100.0 32 ............................ GTGCGAGTTAGAACGAGCAGCCCCATTGCAGG 1109250 28 100.0 32 ............................ ACGATGTTGAAGTAGCGCCGCTTCTGTTCTTC 1109310 28 100.0 32 ............................ TGTACTGCCTTGAGTTTGACTCTAGAGTGGGC 1109370 28 82.1 0 ......................G.CTTC | C [1109390] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCAGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACCTCCTCGCCATGACCTGCCTGCTCGACGAAAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACACCAGTAGCGCCCGGCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCACGCAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAATAACTTACAAAGACATGAAAAAAGAGGGTTTCAGACCAGGAAAACCCGGTATTCCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CCCTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGCAGACACTGCCGCCCACACCCGGCATTCCCCTGACGAAACGAATAGCCTGTCCGTTCCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGAATGAGTGCAATGGACCTCAAGCGCCGCCGCGTCATGCAAGGCCTGGGCGCTGGGCTGCTGTTGCCGGCGCTGGGCGCGCCGGCGGTGATCGCCGCGCCGAATGCGCGGCCGAAGCTGACCGATGGCGTGCAGTCCGGTGACGTGCACGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGTCCGGCACGGATGATCGTCGAGTGGGACACCCGCAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGATCACCGACGAGCGTCTCGACTACACCGCGCGCATCGATCTGCGCGGTCTGCCGGCCGACCAGTCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2905320-2905827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041354.1 Pseudomonas aeruginosa strain AZPAE15042 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2905320 28 100.0 32 ............................ ATAGGCATAACTCCCGTCTGGACCGCTAGAGA 2905380 28 100.0 32 ............................ TGTCCGGGGAAGTAGATGAACGAGCCGCAGAC 2905440 28 100.0 32 ............................ AGTCAGTCGAAGAGCCGGATTGGGCTGGTAGA 2905500 28 100.0 32 ............................ GTAGCGCTTGCGGTCTGCCGGGTCGACCTCGG 2905560 28 100.0 32 ............................ GAGCAGGCAGAGGCGGAGCGGCCGGAGGTTGT 2905620 28 100.0 32 ............................ TCGGTGATGCCCCGGCGAACCGGGGCGGAATG 2905680 28 100.0 32 ............................ ATCGACGCCGCCCTGGGCCGCCTGGTCGAGCC 2905740 28 100.0 32 ............................ ATCGAGGCACTGGAAGCTGAAGAGTGGCTGGA 2905800 28 92.9 0 ..G.....................A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGGATGCGTTTCCGAGCCTCCTCCTCACCCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAATCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2914996-2914368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041354.1 Pseudomonas aeruginosa strain AZPAE15042 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2914995 28 100.0 32 ............................ CGCTCTATGCGTCGCAGCAGGTCCTCGGTGAC 2914935 28 100.0 32 ............................ GTCAGCAGGCGCAGGAATAGCTTTCACCAGTT 2914875 28 100.0 32 ............................ TGCGGGGCTGCTGGCAAGGTTGGAAGCTGCAC 2914815 28 100.0 32 ............................ ATGACCCAAGCAAACAACGGAAAGATCACCAC 2914755 28 100.0 32 ............................ TTCTTCCCGCGCTTGCTGTTGCGGAACTCCTC 2914695 28 100.0 32 ............................ TGGGAGTGGCCGCGCATCAACGCCGGCTACTT 2914635 28 100.0 32 ............................ GAAACCAGGGAGCCCATCTGATCGAGCCTCAG 2914575 28 100.0 32 ............................ AGGATGTCGCCGTCCGTGACAGCAACTGCTAT 2914515 28 100.0 33 ............................ TTCGAGGCGCTGTACGCATGCCAACAGTGGCTA 2914454 28 96.4 32 .....T...................... CGTTGATCTAATGCGGATGCGGGTGGAAACAG 2914394 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGATCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : CTTTCCCGCCCTACCCAATACCCAGCCAATATCAGGAAAGTCCTACCTCCTCCACCCTGCCCGCCCTGCTACCCTCACCCGGATGCAGCAATGCGCCACCACCTTGAAGCCCATGCCTCTCGTACAGACGAAAGCGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGGTGCCCTGGTGCAGTATTCGACAGAACCGATAGGGACGGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGCACTGAAGACGATCCTTCATTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGCGTCGAGTACGTCACCGACGAAGGCCGGCACTCGCACTACTGGAACATCCCCATCGCCAATACCACCAGCCTTCTGCTGGGCACCGGCACCTCCATCACCCAGGCGGCCATGCGCGAACTGGCCAGGGCTGGGGTACTGGTGGGTTTCTGCGGTGGCGGCGGAACGCCGCTGTTCAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //