Array 1 1451-3334 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHRY01000004.1 Rhodopila globiformis strain DSM 161 scaffold0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1451 36 100.0 30 .................................... CAATACATCCCGCACGACTTCGCATCATCG 1517 36 100.0 30 .................................... CATCGAAACGCTTTGGAGCACGTGACATGA 1583 36 100.0 30 .................................... CTTGCGGGATGTTTTGACCGCGTGCGCCGT 1649 36 100.0 30 .................................... ACAGACGTTCAGGTCACCGTCAAGTCGTGG 1715 36 100.0 30 .................................... CTTGAGCTTGTCGATGACGGCCGTCTTGAA 1781 36 100.0 30 .................................... CCACCGAGCCGACGATGTTGGCCTACGCGA 1847 36 100.0 30 .................................... TTCCCGAACGGCTTCGACTTCACCCATGTC 1913 36 100.0 30 .................................... TTCGGCCCCAACGACAAGACGGTTGACCTC 1979 36 100.0 30 .................................... ACAGTGCGCTAGGCCAATAGGCAGCTTCGT 2045 36 100.0 30 .................................... CAAACCACGAAAGGGCACCAGAAATGTCAG 2111 36 100.0 30 .................................... ACTATTGTCACCGTCTGGCACCGAACCCCG 2177 36 100.0 30 .................................... CCGAAAGCCTCCGGCTTGCCCGGGCGTTGT 2243 36 100.0 30 .................................... TATCTGGCCCATGGTCCGAAGATGGCGGGG 2309 36 100.0 30 .................................... CGGCCATGCTTTGATTGTTTGATTGGCGGA 2375 36 100.0 30 .................................... CGCCATCGTATCCAGCCGCGCGTTGTGAGC 2441 36 100.0 30 .................................... ACGGACGTATGGGGGCGGTATACAACCCCG 2507 36 100.0 30 .................................... ATACTCTCCGTTAGCGAAAGCGATTGTCTC 2573 36 100.0 30 .................................... TCCACGGGCGGCAGGGTGAGGGCGGTGTAG 2639 36 100.0 30 .................................... CTCGGCCAGTTCATCAAGGACATTTACGCG 2705 36 100.0 30 .................................... TACGGCGATTGCCACAACATAATGTTCCGA 2771 36 100.0 30 .................................... AAGGAATATGAGACTGGCGCTTGTGAGTCT 2837 36 100.0 30 .................................... CACCGCGTCGCCCACAGCGGCGGTGTCCAC 2903 36 100.0 30 .................................... GAGAATGTAGAGGAGAACGATATGGCCGGC 2969 36 100.0 30 .................................... CACAGCCGGCTGCAGAACCCGCGCCGACAG 3035 36 100.0 30 .................................... TGTCCGCATACGCAGGGCCGCGCGGGCCAG 3101 36 100.0 30 .................................... GTTCGGGTGGCGCGGGTGCTCCGGGATGAC 3167 36 100.0 30 .................................... GGGTGATTGTGCCCGGGCCGACGGCCTGCG 3233 36 100.0 30 .................................... GAGCGCCACCTGCGCCCCTCGGTCATCTTC 3299 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGAT # Left flank : CGCCAAAGTCAGCAGCAGGATCGGCCGCTTGAGGTGCCGGCCCAGGCGGTGCAGCAGCGCCGGGTCCGGCGCCACCATGGCGGCGGCGTTGTGGCAGCCGGCGTAGCCGGGCGCGGGGTTGAGGAACGGGCCTTCCAGGTGGAAGCCCGGCACCATCAGCCGCCCCAGCTTGCTGCCGCCGACGGCCTTGTCGAGCGCGGCGAGGCGGCGGGTGAGGGTGATCTCGTCGGCGGTGACCAGGGTGGGCAGGCAGGTGGTGACGCCGCTGCGCAGCATGGCGCGCAAAGCGTGGTCGAGCGCGCCGGGGGTGAGGGCGGCATCGTTGAAGTCGATGCCGGCGTAGCCGTTCACCTGCAGGTCGATCAGGCCAGGGGATTGCATGGCGGGGCTTTGGCCGAGGGGGCGGGGGGAGTCAAGATGGGCCTTGTCAGCCGGTGCGACAGCTATGCCGTCCGGTGGCGGGAGGGGGATAAATCCCCCTCCCGCCACCGGACGGTGTC # Right flank : TCGGAGCACAACAAGCGACTGAAACTGCTGTGATTTTCGAGATTTGCCACCTCGAAAATCACAGCAGAATCATCTGGCGCGAGCCAAGCGACTCGGTTTTTGTCGCCTCACCGAGCAACAATTTCATCCTTTCGTACTGCCGATCCGTCACCTGCAACGCCCGTACGCTTCCCTCGCTTGGCAGATTTCGGGTGACCCTTGCGATATGCTTGGTTGCCCCGTCCTCGCCGCGGCAGACCCGTGCATAGACCGAGAACTGTAGCATCATGAAGCCATCATCCTTCAGGAAGTTGCGAAACCGGGTTGCGTTGCGTCGCTGAACCTTGGTCCCTACCGGCAGGTCGAAAAACACAAACAGCCACATGAAACGCGCCTCCGCCTCCGGCATCACGCGACCATCCGCGGCATCTGCAGCACCGCCGCGCTGCTTGTCTGCATCGCTCGCACCAGACTCTCCGCCGCCTGTTCGGTGGCCGTCAGCAAGGACACGGTATCCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //