Array 1 2925956-2935293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061839.1 Treponema pedis strain KS1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2925956 36 88.9 30 C....A...CA......................... TCTTCTTTGGTTTTCCCATCAACTTCTACG 2926022 36 100.0 30 .................................... AAGTACGGGTTTAAGCAGGAGAGGGACGCA 2926088 36 100.0 30 .................................... AAAAGAACGTTTCAGATATGGTATCTAAAC 2926154 36 100.0 30 .................................... TCACAACGCGCATATCTTGAATTCATTTCT 2926220 36 100.0 30 .................................... AGGAAGCCTCTCCCGCTTATACTGCCGACT 2926286 36 100.0 30 .................................... TGGGAATAAATATTTTCACCTTTTCGTCTA 2926352 36 100.0 30 .................................... GCTTCAATAAGCCTTTAGCGGTGCGCAACG 2926418 36 100.0 30 .................................... TTCCTATTAGCATCTTCGCTTTAACTACTG 2926484 36 100.0 29 .................................... CAACCTCATCGCACATGACCGGGACTAGG 2926549 36 100.0 30 .................................... TACGCCAAAATTCTTTCGAATGAAATCGGA 2926615 36 100.0 30 .................................... CCGGGATTGAGATAGATGAGGAGTATTTTC 2926681 36 100.0 30 .................................... GGCAATCCCGGGCGAAAAATCAAGTAAAGA 2926747 36 100.0 30 .................................... ATTTAATTTTTCTTCCGTCCAATAAGAAGA 2926813 36 100.0 30 .................................... AGACCTGTTTAAAAGCCGTTTAAAAACGTC 2926879 36 100.0 30 .................................... GGAACTAATAAGTTAGATGATTGCCAATCT 2926945 36 100.0 30 .................................... ATAAAACACTCCAAGTTGACAAAAGAATTT 2927011 36 100.0 30 .................................... ATAATCATCGGTCGAAAAAAAGATTTCTCC 2927077 36 100.0 30 .................................... ATATATTTCATAACCTGTTCTACCGAAACA 2927143 36 100.0 30 .................................... TGTAGTTCTTCCATTCCTTCAGGAGTTATA 2927209 36 100.0 29 .................................... ATATCCTTTAGTATCGTAAGTTCGTTCTG 2927274 36 100.0 30 .................................... AAGGTTTAAGGTTGGACCTTAAAACTAAGG 2927340 36 100.0 31 .................................... TTTAGGTCTTATGAACACTAAACTAGGAAGA 2927407 36 100.0 30 .................................... AGGGAGTAGAATTGGATAAATCCTCTCCTG 2927473 36 100.0 30 .................................... TTTCTTGTTCAACTTCTGTTGGATACATTG 2927539 36 100.0 29 .................................... TTTTTCTTTGCGAAGATTAAAACGTTTTT 2927604 36 100.0 30 .................................... TTTAGATTTCGGAATTAGAGGTAGGCCAAG 2927670 36 100.0 30 .................................... TTTACCGAGAATTTATATGCAGCTGGAATT 2927736 36 100.0 30 .................................... AGCACTATCAAAAGTTTCTGCAATAGCACT 2927802 36 100.0 30 .................................... CGCATAGATATAGATATATTGCCTATTCCT 2927868 36 100.0 30 .................................... AGGATAACCCATATCCTATTGGGCAAGATA 2927934 36 100.0 30 .................................... TCGAGCAACTGTAACTAATTGCTCAAAATG 2928000 36 100.0 30 .................................... CATATAGAAACAACTGTGAAAGAAAAGGCA 2928066 36 100.0 30 .................................... GGGGTATGGGAGCCTATGTGTGAAGAGTTA 2928132 36 100.0 30 .................................... GCAGACTATCATAGTATGGCTCAAAAGCTA 2928198 36 100.0 30 .................................... GAAAGGAGACTCATTTGTGCCTGATGGTTT 2928264 36 100.0 30 .................................... AATATGTGTTGGGTGTAGTAATAGAAGTAA 2928330 36 100.0 29 .................................... TGGTGTGGTAGATGGTCGCGATATTATTT 2928395 36 100.0 30 .................................... CATATAGAAACAACTGTGAAAGAAAAGGCA 2928461 36 100.0 30 .................................... GGGGTATGGGAGCCTATGTGTGAAGAGTTA 2928527 36 100.0 30 .................................... GCAGACTATCATAGTATGGCTCAAAAGCTA 2928593 36 100.0 30 .................................... GAAAGGAGACTCATTTGTGCCTGATGGTTT 2928659 36 100.0 30 .................................... AATATGTGTTGGGTGTAGTAATAGAAGTAA 2928725 36 100.0 29 .................................... TGGTGTGGTAGATGGTCGCGATATTATTT 2928790 36 100.0 30 .................................... CATATAGAAACAACTGTGAAAGAAAAGGCA 2928856 36 100.0 31 .................................... TTACTTAAAACAGGTATAACTGAGATTAAAG 2928923 36 100.0 29 .................................... ACTACGAACGGGATAACTATTACAGATGG 2928988 36 100.0 29 .................................... TCAAGCATTAAAAGACGGCGAGCTTATCC 2929053 36 100.0 30 .................................... TTCCGCAATTTGAATAATTTCCTCGTACTC 2929119 36 100.0 30 .................................... CGCCGTTGCTGCCGGATATGATATTGTTCC 2929185 36 100.0 30 .................................... CTGGACTAGGTAAACAGACAGCTGACCTTA 2929251 36 100.0 30 .................................... TCAATAGCAGGATTAAATGGATTAGAAGGT 2929317 36 100.0 30 .................................... CGAGATGTACCTTTGACGGAGGTTATTTTC 2929383 36 100.0 29 .................................... ATATTAAATATACGGTTTCTCAATTCAGC 2929448 36 100.0 30 .................................... ACATCCTGAATACGTTGCGCCAATTGCTCT 2929514 36 100.0 30 .................................... GGAAAAGTCAAGATACAGATGGTTGGATAT 2929580 36 100.0 31 .................................... TTCAGGAGAAAATCTTGCGTCAGGGTTAAAT 2929647 36 100.0 30 .................................... GTGATAATGGCAATACTCTGCCATTTTGTT 2929713 36 100.0 30 .................................... TCAAGTTTAGAATAGAATTCATCATTATTA 2929779 36 100.0 30 .................................... GCTGTTTTGCCTAAAGAAATTCGCATACCT 2929845 36 100.0 31 .................................... ACTCGATTTTATGCCATTCCGCTTTGCGCTC 2929912 36 100.0 30 .................................... GGAAAGAAACTCAAGGTATGCGCGTTGCGA 2929978 36 100.0 30 .................................... ACGCAACCGTAACCGCTAAAACATCGCTCG 2930044 36 100.0 30 .................................... GAAAGGAGCGGCATAATGGCTTTTGTTGCA 2930110 36 100.0 30 .................................... TTATACACAAGTGATATGCCCGAGCCAACA 2930176 36 100.0 30 .................................... ATGATTCTGCTAAGGATACGTTGTTTCACA 2930242 36 100.0 30 .................................... TGTTTTGCAAATCTCTTTCTTAAACAGCCT 2930308 36 100.0 30 .................................... CTTATTTACATCAGTACCGTCAGGCGGCAC 2930374 36 100.0 30 .................................... GTCTTCAAAATTCTTATCGAGAATTCTATA 2930440 36 100.0 30 .................................... AATATGAGCCGAGGAGTTTTGAGTGAAGTA 2930506 36 100.0 30 .................................... CCTAGAATGTAAGCGGCGTTGAGTACGCGG 2930572 36 100.0 30 .................................... TCTTCTAATTTAAGACAGCTTATTGAACAT 2930638 36 100.0 30 .................................... CAGGAACAACCTCATCACACATAATAGGTA 2930704 36 100.0 30 .................................... ATTTGAAAGCGACCGTCACCAGTTGACACA 2930770 36 100.0 30 .................................... CGTAATTTGGGGCAAATACGGTGAAGCAAT 2930836 36 100.0 30 .................................... TTTTAAAAAAAACGAAAAAAGAGCTTTATG 2930902 36 100.0 30 .................................... TCTACATCATAAACCTCAACGACATTAGGG 2930968 36 100.0 30 .................................... ACTTAAGACGGGTGAGGTGTATCCAACACT 2931034 36 100.0 30 .................................... GGTATAAATCTGAAGTGCCTGCTCAGCTTG 2931100 36 100.0 30 .................................... CGCAACTTTAGCAATAGCGTCAGTTAAGCC 2931166 36 100.0 30 .................................... TGGCGGAACCGTAATAATACTTGAATTAGA 2931232 36 100.0 30 .................................... CCGTAACATTGGGAGCCGATGACCCCGTCG 2931298 36 100.0 30 .................................... TATTATATGCGTTTTTTGGACGCCGAGACG 2931364 36 100.0 30 .................................... TTCGATGGTCGGGACTGGTTTCAGAAGAAA 2931430 36 100.0 30 .................................... GCTCAGACTTGGCAGAAGGTTCAGGGTGCT 2931496 36 100.0 31 .................................... TCATACTCCTTTTTTTTGCTTAAAGGTTTAT 2931563 36 100.0 30 .................................... AGAAGAAATATATCATGTTATAGGCATCGC 2931629 36 100.0 30 .................................... AACTACGAACGGGATAACCATTACAGATGG 2931695 36 100.0 30 .................................... AAGCAAGACAAAGCCGTATACGACAGCATC 2931761 36 100.0 30 .................................... AGGCAAGTCAAAAATGTGCTGGGTGTAATA 2931827 36 100.0 30 .................................... GCCGTGCGTCGTTTTCAACGCTCTCTTTTT 2931893 36 100.0 30 .................................... TCCGCCCCGTGCGAGGTCGAAGCCTGGCCA 2931959 36 100.0 30 .................................... ATTTTAAAAATGATAATTATCAATCTTTTT 2932025 36 100.0 30 .................................... GCATTCGATGTTCAGGAGAAGCTAACGAGG 2932091 36 100.0 30 .................................... TTTTTGCCTATTAGTATCTTAGCCTTAACT 2932157 36 100.0 30 .................................... CTTTAAGTTTTGAATACACCTCACCCGTCT 2932223 36 100.0 30 .................................... GAATTTCAACTGAATACAGAGACCTGTTCT 2932289 36 100.0 30 .................................... GGGCATATTAAGTTAAGACCGCCTATATAT 2932355 36 100.0 30 .................................... CGCTTGATTTTTAAATAAACATAAAAATAA 2932421 36 100.0 30 .................................... CAGGCGGGGACGAACCGCCTGCCGCGTAAA 2932487 36 100.0 30 .................................... ATTGATAAGCTAAAAGACAATGACCCTATG 2932553 36 100.0 30 .................................... ATAATTTAGTGTATTTAGGATTGTGCTATG 2932619 36 100.0 30 .................................... TCAACTACAACAGTTATTCGATTACGAATA 2932685 36 100.0 30 .................................... AAGATAATGTTAAACCCGACGGATTATGGC 2932751 36 100.0 30 .................................... ATAGCTATCGTTAGTTTTGAGAATATATTA 2932817 36 100.0 30 .................................... TACAGTCCTTCTGAAATACTAATGCTTAAA 2932883 36 100.0 29 .................................... ACAGCGAGAATTCTACACACAGCACGGCT 2932948 36 100.0 30 .................................... GTTTTTTTAAATAACCTCCTATTAAGGAGG 2933014 36 100.0 29 .................................... TCGACAAATCCCTTATTACACCAGGCTTT 2933079 36 100.0 30 .................................... CGTTTCCGGCAACGGGTTTTACCTGCCGGC 2933145 36 100.0 30 .................................... GAAGCTAATTTAAAAAGGATGCAGGAGGAA 2933211 36 100.0 29 .................................... TTCTCGGACGTTTCCTGTATCAATGATTT 2933276 36 100.0 30 .................................... CTTCTCGGCAAGTTTATTGCGTTTATTACC 2933342 36 100.0 31 .................................... TACGGCCTTGATGTTATTTTGGTACTCAACG 2933409 36 100.0 30 .................................... CGGCAGGTGAGCCTTCACCGCCGGCGGCAA 2933475 36 100.0 30 .................................... CGTAAAGATTTTTACTTACCTCTCCACCTG 2933541 36 100.0 30 .................................... TTAAGCTCCTCAAAGGCGAGGGGCGGATCA 2933607 36 100.0 30 .................................... GGGTTTAGTTTGTAAAACTATTGAAGAGCA 2933673 36 100.0 30 .................................... TGTTAGATGCTAAAAATTAATCTTTATATT 2933739 36 100.0 31 .................................... GCAGCAGTAGCAAGATTGGTAGTCCCTGCAA 2933806 36 100.0 30 .................................... AGGCAAATCGAAGATGTGTTGCGTGTAGTA 2933872 36 100.0 30 .................................... CGTAAAGATTTTTACTTACCTCTCCACCTG 2933938 36 100.0 30 .................................... TTAAGCTCCTCAAAGGCGAGGGGCGGATCA 2934004 36 100.0 30 .................................... GGGTTTAGTTTGTAAAACTATTGAAGAGCA 2934070 36 100.0 30 .................................... TGTTAGATGCTAAAAATTAATCTTTATATT 2934136 36 100.0 31 .................................... GCAGCAGTAGCAAGATTGGTAGTCCCTGCAA 2934203 36 100.0 30 .................................... AGGCAAATCGAAGATGTGTTGCGTGTAGTA 2934269 36 100.0 30 .................................... TTTATAAACGTGAACTTGCTAAGACTAAGG 2934335 36 100.0 30 .................................... TCGGCTGAGGCTACCAAATCGGAGCTTGCG 2934401 36 100.0 29 .................................... ATATCTTATCTCCTAAAAGGTAAGCGGCG 2934466 36 100.0 30 .................................... GCTAAATATACTCTTAAATCTAAGGACGAG 2934532 36 100.0 31 .................................... CAAAGCTATCCGCAACTGAGGATACCCCTGT 2934599 36 100.0 30 .................................... AAAGTTGAGGGGTTTACTCCTCAACTTGCC 2934665 36 100.0 30 .................................... CCATTCCTTCGTGTTAGCAGAACCCCCTCA 2934731 36 100.0 30 .................................... ACCGCATCTCATCATAACGACCTTGATAAC 2934797 36 100.0 30 .................................... AGGAAGGTCGAAGATGTGCTGCGTATAATA 2934863 36 100.0 30 .................................... TACCGCGGGGCAGTCGGTGCGCAAACATCG 2934929 36 100.0 30 .................................... ATACCACAAATTCAGGAGTTAAGCCTTGTA 2934995 36 100.0 30 .................................... TTTTTGCTTATTTTTATAGCACTGTTTAGC 2935061 36 100.0 29 .................................... AAAAGATGGTCGATACCGACATCACGGGG 2935126 36 100.0 30 .................................... GCTTCGGGTGAATGGGGCTATAAATTTAGT 2935192 36 100.0 30 .................................... GCAGCAGTTGCCGGCATGTGTTGTTTTTTG 2935258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 142 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : CAGATAAAAAGCAATATACGAGTACCTATACCTTTCGATTGGACTTTCATTAAACACATTAAAAATCCGGCATATTCCTGAAAACATTTCGGGAACTAAATAATGCACGGGAATTCCGATGCATTATTTACTCTAAGCGCAAACAAAACTTTTAATCCGCCTACATATCGAGCAGCAAAACCAAAATGCAAGACTCATATTGCTAAATTTCGATTTGTTTATACAAATGGATAAATTACGGCTATAATATCAGTAAGCGCTTTTTCATCAGTTAAAAAAATTATTTTGCGGAAATAAAATGTATTACTCTTTCGGATCAACAGGAAAAATTGCATCTGCAACCTGCTTTCTTTCATCTTCTGCTCCTATCCCAATAGACACAAACTTTCCAAGTTCACATTGAAAAAGGAGAGCATTTTTAGTATTCAATCTAAAAGAATTTATTATCATTATAGTTTTCCCTTTTTCGTTTTCCTTCATGTAATTTTATCGCTTATTAA # Right flank : TGTGAATGGTGTAAACCTATACCTAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGAATTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAGGGTGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGGATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCCGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGGCGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTGTATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //