Array 1 3007-2542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCZC010000118.1 Campylobacter sp. 2018MI13 NODE_118_length_3356_cov_8.198823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3006 36 97.2 36 .........T.......................... ATTTGCTGTTATCACCTGTATATTTTTCTCAGTTAT 2934 36 97.2 34 .........T.......................... AAATTGACTTAAAACTTTTAATGTATTAGCTTTA 2864 36 100.0 34 .................................... TATTAAGCATATTTCTATACCTAACCTTACTTTT 2794 36 100.0 36 .................................... CTATTATTTAAATTTATATGCTCTTTACTATACTTT 2722 36 100.0 38 .................................... TTAATTATTTTTACTTCTTTATTACCTAAATCATATAA 2648 36 100.0 35 .................................... TTAATTTCTAGCATTTGTAAAGCTAACTTAACTTG 2577 36 91.7 0 .........T.........C...............A | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 98.0 36 GTTAGAGAACATTGCCCCGATTTAGGGGATTGAAAC # Left flank : CATTTCGCATTTACCTAGTTTTAGGCTTAAAATCAGCTTAAATATTTTAATTTTATGGGTTTTTGTGAATTTTTGCTTGGCATTTTCTAAAATTTATTTTTGTTTAAGATTTAAAAGCCCTAATTATAGGCTTTTTAGACTTTAAAAATTTCTTAAAATCAGAAAATGATAAGCAAATTAAAAATTTTTATGATGAAATAGGCGTTTTAGTAGTGAAATTTAATTTTTGCTTGGCATTTTCTAAAAAATTTATTGTATTAAAATTATTTGCTGATAATTAGGCATTAATCAAGGATATTTATAATGATTTTTTTATTTTAGTTCTTTTACAAAGTATGGGAAAATTAAG # Right flank : AATCCAGCCTTTGCATTAACATGGTTGATATTTGTAAAAGTCAAATGGCATATAAAATTTCAAAAGTGGTATAAAAATAAAAAATCACATATAAAGAAACGGAAGTTTAAAATAAGAAAGGTGATAAAATTATGTAATTATAAGTGAAATATTTTGATTATAGTGATAATGATTTTTTAATGTATTTTCATTATAAAAAAAGTATTTTTGTAATACATATTCTTAACAATGTTTATGTATTACAACATATTCTTATCAAATAAATTTAGATTTTAATATTAAATATATTATTTTTTGATTTTCTTTACTTCTCCTTTTGATTAAATTTTGGCTTTTAGATTTATTTTAATAACTCATCAAAATCATCAAAAGTATTATCTAAGCGATTTGAATTACCTGAATTATTTGAGCTTATTATTGCCAATGCTATCGTTGTTATTGTGCCTGCTATAATTTTTAAAGCCAATTCGCTAATTTTTATTTCCATTTTTTCTCCTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAGAACATTGCCCCGATTTAGGGGATTGAAAC # Alternate repeat : GTTAGAGAATATTGCCCCGATTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 15095-14842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCZC010000043.1 Campylobacter sp. 2018MI13 NODE_43_length_15443_cov_27.883390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 15094 36 100.0 36 .................................... CAAAAAAATCATCATAAACATTTAAAGACTTATAAG 15022 36 97.2 36 ...................T................ TTTATATTTTCAATTAAAATACCATAACGAATTTTT 14950 36 94.4 37 .........T.........A................ CTAGTCTTGTTTCTACGCTTAATTTAGTTCTATCTAA 14877 36 86.1 0 .........T......................CTTA | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 94.4 37 GTTAGAGAACATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : CATTTCGCATTTACCTAGTTTTAGGCTTAAAATCAGCTTAAATATTTTAATTTTATGGGTTTTTGTGAATTTTTGCTTGGCATTTTCTAAAATTTATTTTTGTTTAAGATTTAAAAGCCCTAATTATGGGCTTTTTAGACTTTAAAAATTTCTTAAAATCAGAAAATGCTAAGCAAATTAAAAATTTTTATGATGAAATAGGCGTTTTAGTAGTGAAATTTAACTTTTGCTTGGCATTTTCTAAAAAATTTATTGTATTAAAATTATTTGCTGATAATTAGGCATTAATCAAGGATATTTATAATGATTTTTTATTTTAGTTCTTTTACAAAGTATGAAAAAATTAAG # Right flank : TAAAATTAGTTATTTGATAAAACAAAAAAAGTTAAAAATTAATGAATTTACAAGTTAAAAAATATAAATTATTTATTTAATTTCACAAATATTTTAAAAGAATTTAAATCTAATATTTGATTTTTTAAATTTAGAATCAAAAATATTTATTTTATATTCGCGGCAAGTATTATTAACGCTAGTTAAGATAATAAAAGAATATTAAATCACAAGAAATTACTTGCAATTTAAAATATATCTTAATTTATAATCTTCAAAATGTTTTGGATAAGGGACACTTACTTTAAAGCTTTTTGATGCGTTTTCATTGATAATCCCTTCTATTTTAAAATCATGAGAGTAAAAATTGCGAATTTTATTAAGTTTTAATGGGTCAAAGCCTTTGCTTAAATCAAATATACTTCCATCTACTTTTTTGATACCAAGATTTATTATTCCTATATTTAATTCACAGGTTTTTACAGGGACTTTTCCATTATTATATATTTGACCACTAATTA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAGAACATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [88.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1789-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCZC010000068.1 Campylobacter sp. 2018MI13 NODE_68_length_10092_cov_48.752233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1788 37 97.3 36 ..........................T.......... ACTTCTTTAAGTTTCATTACGCTACTTGCAATACTC 1715 37 97.3 35 ..........................T.......... ATCTATCCTGAATAAACAAAATTTTATCTTCTGAA 1643 37 97.3 36 ..........................T.......... TATCTTTCCACCCAAAAAAACAAAAATTAAAAATAA 1570 37 97.3 36 ..........................T.......... TAATTCTTCTTAAAAATTGGTCTAAATTCTCATTTT 1497 37 97.3 36 ..........................T.......... AAAAATCCCATAAGGTATCTGAACATCTCTTCTACT 1424 37 97.3 35 ..........................T.......... CGAATTCTACTTCTACTAATTTCAATCATTTCTAA 1352 37 100.0 36 ..................................... ATAAATTAACATTAGAGCAAAAGCAGAATGGCGAAT 1279 37 100.0 35 ..................................... AAAACAAAAGTAAAAGTAATAGGAATTAAAGAAAT 1207 37 100.0 36 ..................................... CAATTTTTTCTGCTGAAAACTACGCTTAAACTATAA 1134 37 100.0 36 ..................................... TAAGTAATGCCGATAGCTTTAAATAATTGCGGATAG 1061 37 100.0 35 ..................................... TATCCATACGAGAGTCAAAATCCATTTCGCCTAAA 989 37 100.0 35 ..................................... TTACAATTGGAAGAAAAATAAGCCGAATTTATATC 917 37 100.0 36 ..................................... AATATCGGCTTTTATTGTCTCATTATAAATTTTTAA 844 37 97.3 36 ..................C.................. CTAAAATCTAAATCTAAAAGATTTGAAAGTTTATCA 771 37 97.3 37 ..................C.................. AAAGTAATACATATACATATAAAGATGTCGGTTTAAA 697 37 97.3 34 .........................G........... ATAGAGTTTAAAAAGTCTAACTTATCAGAAATAT 626 37 100.0 37 ..................................... TTTCAATGCTTTCTAAAGTATTGTTTAAGTCTATTTG 552 37 100.0 35 ..................................... TCAAACATTGGAAATGCAATTAATGTGGCTTGTGA 480 37 100.0 35 ..................................... AATCCACCTGTATTTTGATAGTAGTCTTCTGTTCC 408 37 97.3 35 ..........................T.......... TTATTTAAAGCAATAGAAAGTTGAGAATTTGTTAC 336 37 97.3 35 ..................C.................. TGTCTAATTAATAAATAATTTCATCATTAAGCTTT 264 37 81.1 0 ...T....................T.AT.C.A....G | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 97.8 36 ATTGCAAACCTAATTCTATCACAACACGGTTTGAAAC # Left flank : TTGTATGTGTTACAAATACTCCATTATTTTTTGCTCCCATATCTATGCCAATGTAAGTTTTCATTCTTGTTCCTTTAAATTCATTTGTGTGAGTATATATAAAATATTATAATTTATAAATGTTATGGAATAAATAATAAAATATCGGAATTATAAAATAATTATCCGATATTTTTCTACTCTTATTAGTGATTTTAAAATCAAAAGTTTTAAAACTAACATTTACCTATACATAAAATATCATAAGTTTAATTAATTTTACTGAAGGGTTATCGGGGTGGCTAAGCCAGTTGCCCGATATTTTACCAACTTTAAAATGATTTCAAACTCTAATATATTGTGATAGAATTAGATTTGCTTTTTAATTTTAGTGATACAAACTAAACATAGGTTTAATTTTTCCACTAAAGTGCCAAAATTTGAAAGAATTTTCAAAGTGGAAAAATCACTACTTTTTAAAAACTTTCAAATACTTGATACATAAGCAAGTTTTCCTTGCT # Right flank : GTAACGATATAACATAATAATACAAAACAAATACGATTAAGCAAAAAATATAAAGTAGAAAAACTAGAGTGAGTTTAAATTATTTAAATATTTTAAAATATTATTAGGAACTAGCATACTAATTCCTAATAATAAGTTTATTTTTAAGCTAATAAATCAAGTTCTAAATTCATTTAGCTTTTTGTTTAGTTGTTCTGTCATCTCACTTAGATGATTTGCTGCTCCTGC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAACCTAATTCTATCACAACACGGTTTGAAAC # Alternate repeat : ATTGCAAACCTAATTCTATCACAACATGGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //