Array 1 239026-236955 **** Predicted by CRISPRDetect 2.4 *** >NC_010278.1 Actinobacillus pleuropneumoniae serovar 3 str. JL03, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239025 28 100.0 32 ............................ GTAGGGAGGCGGTAGCTACTTGCCTAATTTTT 238965 28 100.0 32 ............................ TAATTTTGCCAATGCTCCCATTTTTTGTATTT 238905 28 100.0 32 ............................ TTTCATTGCCATTTTACAGATATTTTCATTTA 238845 28 100.0 33 ............................ AAAGCAAAATCACGCATGGAGGTGTTATGGCGA 238784 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 238724 28 100.0 32 ............................ TTGATAAGCACATGAGCAAATTTCTTAAACTG 238664 28 100.0 32 ............................ TCTAAAATACGTTTTAAAATTTCCCCGATTTC 238604 28 100.0 32 ............................ TATACATTCTCATAAAATAAATTGTTGCAATT 238544 28 96.4 32 .C.......................... AGTTAAAAAAAGCAAATGGTTAAAAACTTCGT 238484 28 100.0 32 ............................ AGTTAAGGACGAGATGACGACTTAACTATAAC 238424 28 100.0 32 ............................ TATGCCAAATTGCCCGTGTTGCAATGGCAATC 238364 28 100.0 32 ............................ TGTGGTAAAACTAAAGCCCGTTGAATGTTATT 238304 28 100.0 32 ............................ GCAAAATACAATAAAGGCAGTACATTACAGGG 238244 28 100.0 33 ............................ CTTTGGAAAAGGAACAGGATCAGGGGGCGAACT 238183 28 100.0 32 ............................ TTATTGCGTATCACAATATCGCCAACTCTAAT 238123 28 100.0 32 ............................ TTGCACAACGTGATTTAGAGATGGTCGCCAGT 238063 28 100.0 32 ............................ AGATAAACAAAAAATAGAAGAAATTAATATCA 238003 28 100.0 33 ............................ CTGAACCACCGGAAGGAATACTACAATTAGAAA 237942 28 100.0 33 ............................ CTTGAGAAGCAAATAAAGTGATCAGTTTATCAT 237881 28 100.0 32 ............................ TTTGTAGTCCTTCGGATACGCTGCAAATTCTG 237821 28 100.0 32 ............................ TTATCAGGAATATTCTGCCGCTTATGAGATAC 237761 28 100.0 32 ............................ ATAGGCTTCAGATACACCGACAATCGCAATAT 237701 28 100.0 32 ............................ TATGCGTGGCTTGGTCAAATGCCGAAATTAGT 237641 28 100.0 32 ............................ TTGCGATATTGAAAAATTCCAAGCTGTCCGGG 237581 28 100.0 32 ............................ GTTTGAAGCACATGATCTTAAAAGATTATCTT 237521 28 100.0 32 ............................ TTCCATTCGAATAACGGAACCGGAAACCTTGA 237461 28 100.0 32 ............................ TATCAATGAAATCAAAAATCTAAAACAGTTAG 237401 28 100.0 32 ............................ ATTTTTTTATGTTTGCCTGATTTCATTATCGT 237341 28 100.0 32 ............................ GCTATGTAGTCGTTTTCCATTTATTACCTCAT 237281 28 100.0 32 ............................ GCCCGAACAAGATTCAATACTCTATTGATACC 237221 28 100.0 32 ............................ TTTAAATGGAAAAAAGTCCTCTTTCTGACAAT 237161 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 237101 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 237041 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 236981 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCGCTTCCGGCTTATTTAACGCATATGGATTAAGCCAAGCAGCAACCGTTCCGCATTTCTAACCCCTTTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //