Array 1 8277-9749 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOJ01000192.1 Xanthomonas oryzae pv. oryzae strain XZ40 scaffold191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8277 31 100.0 34 ............................... AGGCGCAGGGGGATGTTGGTACGGCGCCAAGTTG 8342 31 100.0 34 ............................... TGCACCCGTACCGAAAGTTTGCAGGGGTGCGGTG 8407 31 100.0 35 ............................... CTGCGGCCCGGGTACGACTCAGTTGCAATGCATAT 8473 31 100.0 37 ............................... GCGCCCGTGGTCAAGCTTACGGAGACCATCATCTCCG 8541 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 8606 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 8672 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 8738 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 8804 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 8870 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 8937 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 9003 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 9069 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 9134 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 9199 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 9265 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 9330 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 9395 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 9459 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 9524 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 9589 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 9653 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 9719 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CCAGCTTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGACGTTCGGTGACGCCGAGGGCCTGGGCAAGCGCAAGCAGACCCGGCGCGAGATCTTCCTTGCGGAGATGGAGCGCATCGTGCCGTGGAAGCGACTGCTTGCCCTGATCGAGCCGCACTATCCGGTGTCAGGACGACCGGGTCGGCAGCCGTACGCGCTGGCGACGATGTTGCGGATTCATCTGTTGCAGCAGTGGTATGCGTTGAGCGATCCGGCGATGGAAGAGGCATTGCACGAGATCCCGACCCTGCGGCGTTTTGCCCAGCTCGGCGGCTTGGATAACGTTCCAGACGAGACCACGATTCTCAACTTTCGCCGTTTGCTGGAAACCCACGGCATTGCCGCTCGGATGCTGGAAGCGGTCAACGCCCATTTGTCGCGCAAGGGGCAGAGCCTGCGGTCGGGCACGATCGTCGATGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3169-376 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNOJ01000010.1 Xanthomonas oryzae pv. oryzae strain XZ40 scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3168 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 3102 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 3035 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 2968 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 2904 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 2839 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 2773 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 2708 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 2641 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 2575 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 2508 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 2442 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 2378 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 2313 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 2248 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 2183 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 2117 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 2052 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 1985 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 1920 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 1853 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 1787 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 1720 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 1654 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 1587 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 1519 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 1454 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 1389 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 1324 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1259 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1193 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1127 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1062 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 997 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 931 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 865 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 801 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 734 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 669 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 603 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 538 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 471 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 406 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 43 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CAGCATTTTTCCAGTCATTGAAATGCAAGAAGCTGGAATTTTAGAGGTTTGATGGGTTGTTCAGACCTTCCTTAGCGGTAATATCAGTCATTTTATTGGT # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //