Array 1 47972-50439 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPEL01000003.1 Rubneribacter badeniensis strain ResAG-85 ResAG85T_contig_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 47972 33 93.9 34 .......T................A........ GCGCCTCGACTGGCTGCAGATACATGTCGCTTCT 48039 33 100.0 34 ................................. TTCCCCAGGGCGACCCGGTGGGCGTCCTGCTCCA 48106 33 100.0 33 ................................. CACGGCGCGCTGCCGCCATTGGGCCTCGGTGTC 48172 33 100.0 35 ................................. TGTGCGCCAACTGGCAGCCGGGTTGCGGATGCTGG 48240 33 97.0 34 .......T......................... GAGGTGCCCAGCGCATGGGATCGCCGGGGCTCCC 48307 33 97.0 34 .......T......................... CGGCGTTCTGCGCCTGGGAATCCAGACCTTGCCA 48374 33 97.0 35 .......T......................... ACAACGCGACCGATGTACGGCTCCGCGACGCTCAA 48442 33 100.0 35 ................................. GCCCTTGAGGTCGTTGCCGGTGCCGGTGCCGTTCA 48510 33 97.0 33 .......T......................... GAGGAAGGGGACCGGGCAAGTCGTCTACTGCGA 48576 33 97.0 34 .......T......................... CGTGGAGCCGGGGCCTGGGCGCACATGCCGGATG 48643 33 97.0 34 .......T......................... CACGCCCGCCGCAGAGTTCTTCGGCGGCGTCTGG 48710 33 97.0 33 .......T......................... CATGGCTGTTTTCGCGGCTGTCAGGACGGTTGG 48776 33 100.0 35 ................................. TCCTGCTCGCTGCCGCACGCGGCGAGCGCCGCGTT 48844 33 100.0 34 ................................. ATTTGTCCCGCTCGCGGGACTTCGGACCGAACTC 48911 33 100.0 34 ................................. GGAGGCCTCCGAGCGGGAGTTCGACGAGGCCCAC 48978 33 100.0 37 ................................. GTCCCCGAGCTTCATTTTTCGTCCTTTCCCTCGTTCG 49048 33 100.0 36 ................................. GCAGCTGCTTGACGAGTACCGGCGCAACAACGAACG 49117 33 100.0 35 ................................. AGGCCGGTGGCGATGGCGTACAGTAAGCAGACGTG 49185 33 100.0 36 ................................. CGCGCTCGCGGCCGCGGCCCGACGCGAGGCGGCGAA 49254 33 100.0 38 ................................. GCTCCAATCGAAGTCGCTCGTGATGGAGTAGGTGGGGA 49325 33 100.0 36 ................................. CTACTGGTACCGAGAGAGCACGACGTCCTTCTTCAA 49394 33 100.0 35 ................................. ATCCGAGGTGACGGCGACCATCTCGTCGGATGACG 49462 33 100.0 33 ................................. CGGCATCGCCGCCAAGTACGGCACGACATACCA 49528 33 100.0 33 ................................. GAAGCCCTCTGACTGCAGCGTGAGGATGTAGTT 49594 33 100.0 35 ................................. GGCCCGGCCACTGACCCGTACGTCATTATCGGCGG 49662 33 100.0 35 ................................. TCGCCGCCGCTGGCGAGCTCGCTCTTCGAGCAGTC 49730 33 100.0 34 ................................. CGAGCAGGCACGGCTTCCTGCCTACTATTTCCTC 49797 33 100.0 33 ................................. GGGGTACACGGGCGAGGTGCATGCCATAGTCAC 49863 33 100.0 34 ................................. GCATCGTGCTCGTGCCGTTCAAGGCGACGTTCAC 49930 33 100.0 34 ................................. GGCAACAAGCGCAGGCGTACTGCCGATATGGGCA 49997 33 100.0 34 ................................. AAAGGTCCTCGACCAGGTCGAGCGCGACGACCTT 50064 33 100.0 39 ................................. GTAGCCACCGTCGCTCTCGTGCTTGATGCCGAGCTGGTC 50136 33 100.0 35 ................................. GAGAACTGCCAGCCTTTGTTGCCCTTCACGATGAT 50204 33 100.0 34 ................................. GGCCCTGACCGTAGCGCAAGCAACGAGCTAAGGA 50271 33 100.0 34 ................................. CCGTGGGCCGCGCCAACTCCAGCATGCGGTGCGC 50338 33 100.0 36 ................................. GACAAAGACCGGCCGCCATAGGTCGCCGTTCAACAC 50407 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 37 33 99.3 35 ATTTCAACCCACGCTCCCCGTGCGGGGAGCGAC # Left flank : CCTGACGTCCTCCCCGCCGCCTTGGCCTTCGGCCGCGGGGCTTCCCTCGGGCTTGCCCTCGATGCTCGCGCCCTCCTAGGGCTTCGTCTCGGCGTTCGCGCCCTCTTGGGGCTTGTCCACGTCCACGGGCACGTTGACCACGGTTCCGTCCCTGCGCACGCAGGAGGTCGTCATGAGGCTCCCTGCGCGAGCCTGGAGACCTCGCGCGCCATCGCGTCGCGGTAGGCGATGCCGTCGCGCCCTCTGCCGCCCTCCTCGAGGACGCGGGGGCGGGCGAGCGCGCGGACGTACTCCCCGGCGCAGTCGCCCGCCATGCGGCAAACCATGTCCTCTACCTCCCGCGCCGCTTCTCCGTGCGCCTCGTCGGCGCTCTTGTAGGTCCCCGAACGCATCCGAGGCAGCCTTGGCCAGCCTCGCTCGGAGGCACAACGCGACCTTGACCACGAGCGGAGCCGAAGCCGCGAAGAACGCGCCCCACCCGTGCTTCTCGAACACGTCGC # Right flank : CCGCAATATATTGCGTTGATCGTGTTCTGTTGTCAATATGCAGACCAAAGAAGAGCGATTGGCCCCCGAAAAACAAGCTGCAAGGACCTCAAAGAGGCCGAATGCGGTGCGAACCTCCCCCGTGGCGCTTGGGAGCCTCATGCTCGCACCGCAGACTACAGCGCCAAGAAGCCCTCGGCTTCATACGTCGGTTTCGCGCCCACGTGCTCTATCTTCGTTTGGTACTTGTTGCCCAAATAATAGAATCGCAAGCTGTCCTTCTCAGGGTCGATGAGTTCCACCAGCTTATTCTTGATGCGCACCATCTCGGCTGCATCGGCAACGCACTCGAACACCGAGTTCTGCACGCGCTGACCATAGTTGACGCAGTGGCGCGCAACCTTCCTCAACCGCCGCTGCCCCGCCGGATCCTCCGTGTTCACGTCGTACGTGATGACCGTCAACATCTCACTTAGCCTCACTTCCACAGAAACGGCGGATAGCCGTCCAAATCGCCCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACCCACGCTCCCCGTGCGGGGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 27881-24491 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPEL01000017.1 Rubneribacter badeniensis strain ResAG-85 ResAG85T_contig_017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27880 36 100.0 30 .................................... CCGCCAGGACGCCGGACAGCGCGGCGGCGG 27814 36 100.0 29 .................................... ACGGTCATCACCAGCAACTTCAAGGTGAG 27749 36 100.0 30 .................................... TCCGGCGACTGCCGGGTGGTGGACGGACCG 27683 36 100.0 29 .................................... GGGCTTCGCGTCATCTTCAAGCAGGGTGT 27618 36 100.0 30 .................................... GAAAACCTCCTTGTTGAATCCCATGTGTGT 27552 36 100.0 30 .................................... GAAAACCTCCTTGTTGAATCCCATGTGTGT 27486 36 100.0 30 .................................... CCGTCACTCTGACGCATGGAACCGAGTACA 27420 36 100.0 29 .................................... CGTAAAGGAGTCTGAATGCAGTACACCGA 27355 36 100.0 30 .................................... TGCCCATCACCTTGGAGTGGCGGCGCACCA 27289 36 100.0 30 .................................... AACCTCGTACTTGCCACCCATGCTACTTGC 27223 36 100.0 30 .................................... GGCTGCGTGTAGTTATCGGTGTCCATGCGG 27157 36 100.0 30 .................................... TTACAAGTCCTTCATCACGTGTGGCGACCG 27091 36 100.0 29 .................................... TTGTACCAAAAGATCAGGGACGAGAACTT 27026 36 100.0 30 .................................... GCAGACCGTAGCTCACCATGGCGCAGTGCC 26960 36 100.0 30 .................................... GAGCACAGCCTGCGGGTCCACGTCCTCGGC 26894 36 100.0 30 .................................... CGGCCACTGGTGGAGCCCGTCGTTGAGGAC 26828 36 100.0 29 .................................... CTGCCCTACTCGGAGTGCCACGCGGCCTG 26763 36 100.0 30 .................................... TGCCCTGGGTGCCGTTCGTCACCGTGACGT 26697 36 100.0 30 .................................... CCGCGAGGTCGTCTGCCTTCGACGCGCGGA 26631 36 100.0 30 .................................... TCGGCGGCGGTCGTGCCCGTGATGCCCATC 26565 36 100.0 30 .................................... GTAGTCCACCATACGCATGACGTCGAAGGT 26499 36 100.0 30 .................................... TCTGGACGATGCGCTCAAGGTCGGTCGACA 26433 36 100.0 30 .................................... GGCCCTCTGTCGTGCCCCAGCGGCCTGTCG 26367 36 100.0 29 .................................... GTCTGGCCTCGGCCTTCGCAGTGTCCAAG 26302 36 100.0 30 .................................... GAACGTCGAGCAGAGCGTGTCCAAGGGCGG 26236 36 100.0 30 .................................... GATCGATCCTAGACACGATGTGCCAGTGGT 26170 36 100.0 29 .................................... GCTCGCCACGACGTTCGAGCCCGCCACGG 26105 36 100.0 30 .................................... CGAGAACATCCGCTCGATGATGGAGGAGGC 26039 36 100.0 29 .................................... ATCATATCGATGGCGTTTTTGATGTCGCT 25974 36 100.0 29 .................................... TGCCTGTTGATGCCGTCGAGGTACCAGTT 25909 36 100.0 30 .................................... GATGGCGAGCACCTTTTCAGCGTCGTCCTG 25843 36 97.2 30 .....................A.............. TCGTTTCGCCTCATTCCTCGCCTCCTCTCT 25777 36 100.0 30 .................................... CCGCCTTCCCGGCGTCCAGCATGTCGCGCA 25711 36 100.0 30 .................................... GTTCACCGGCGGCTCGATCCCCGGGCGCAA 25645 36 100.0 30 .................................... CTCGCGCTCGACCTCCTCCAGGTCCTCGGG 25579 36 100.0 30 .................................... ACCCCTCCACGGTGTTGGCGCGCCGGGTGC 25513 36 100.0 29 .................................... CTCAAGCTGTACGACACGACCGACGCGCC 25448 36 100.0 29 .................................... TCTGGTGGCGCGCAGCGTGCCGTCGGCAT A [25414] 25382 36 100.0 28 .................................... TGCACGGCGCTCATGGCCCCGTCCGCGT A [25348] 25317 36 100.0 29 .................................... CTCCCATTTGCATACTATTTTACATCATT A [25283] 25251 36 100.0 29 .................................... GCGGTGAACGTCGTTTGGCCGCAATGCGC A [25217] 25185 36 97.2 30 ..................................A. ACGGAGCCGGGCGGCGAAACGGGCATCTGA 25119 36 100.0 29 .................................... GAATCCCTGGGCGCTCGGTGCCGCGAAGT A [25085] 25053 36 100.0 29 .................................... GACGAGCTCGCCGTCCCGGTAGACCCTGT A [25019] 24987 36 97.2 30 ..................................A. AGCAGGTTTTCCGCGTGGTCGCGGATGTAG 24921 36 97.2 30 ..................................A. GGCCGCCTCCGGGCACAGAGGCGGCCACCT 24855 36 97.2 30 ..................................A. TGCTCGCCTTGCCGATAAAGCCGTCGACTT 24789 36 100.0 30 .................................... CCGGTACGTTGATTGGATTGCGAGGACGCT 24723 36 100.0 30 .................................... GTACGCAGTTATTTCTATCGAGAAGTCCGA 24657 36 97.2 30 .........T.......................... CGGGGTTCTGCCAGTAGCCGCGCTCGCCCG 24591 36 100.0 30 .................................... GACCGCGCCAGAATCGGCGACTGCGACTTC 24525 35 75.0 0 ...........AC.G.G.-.A.......GAC..... | ========== ====== ====== ====== ==================================== ============================== ================== 52 36 99.2 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAACC # Left flank : CGCTGATGGGCGAGGTGCTTGAACGTGTCGAGGATATGTTTCTGGCCGAGGATGACGTGCGCCAAGAAATAGAGACGGCGGGACGGGCGTTGTCGGAGCGGGTGGCGTCGCTGGGGTTGCGGCTTCAATCGGACTATGCCTTTGAAGTACAATGGGAGATGCGGAAATACCTGAAGGCTTTTGATTTCGGCGTTGAGGTCGATCCCTTCGATGCGCTCCTTGACAACCTGATAAAGTTTTTGAAATTCGCATCGGATGCCGCGTTTGAAAAGCAGCTGGTTTTCGTCAATTTGAAGAATTTTTTGGAGCCAGATGAGGTCCAAGAGTTCTATCGACAGGCGGTTTTTCTGGAATTGAACGTGCTGCTGCTTGAGAACGTTCCCGACGATGCGGTTTTCGAATACGAGAGAAAAATGTGTATTGACAAGGACTTTCTTCAATCATGAAGCTATGTGCCAGTCGGCTGTCCGTCCTCCCGCAGAGAGGATTTTGCCCCAACG # Right flank : TTGGCGTCCGTCGCGAACGACGGGCGGGCGCGTCGACTTCTCGATCGCACAAGGACTTTTCCAACGTTTCCAACTCGTTTCGTTGCGATGGGGCTTTCTTGGAGTTGACCTGCGCATGTTGACTGGGCAGACGGTGTTCGCCGATGATCGTTGCGACAGACAGGCGACAAGATAGAGGCAAGGAGCGAGACATGGCGAAAACGCGCATCGGCATTTTGGGGTACGGCAATCTCGGCAAGGGCGTGGAGCTGGCTTGCCGCCAAAACGACGACATGGAGCTTGTGGCGGTGTTCACGCGCCGCGACCCGGCTGGCGTGAAGCCGCTCACCGAAGGCGTGGCGGTGCGCTCTGCCGACGACCTCGCGGCGCATGCGGACGACATCGACGTGCTCGTCTTGTGCGGCGGCAGCGCGAACGACCTGCCCGAACAGACGCCGTCGTGCGCCGCGCTGTTCAACGTCGTGGACTCCTTCGACACGCATGCGAACATCCCCGATCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //