Array 1 165889-165249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTNP01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V122 isolate V122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165888 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165827 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165766 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165705 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165644 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165583 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165522 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165461 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165400 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165339 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165278 29 96.6 0 A............................ | A [165251] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183574-182021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTNP01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V122 isolate V122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183573 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 183512 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 183451 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 183390 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 183329 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 183268 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183207 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 183146 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 183085 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183024 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 182963 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 182902 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 182841 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 182780 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 182719 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 182658 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182597 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182536 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182475 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182414 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182353 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182292 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182231 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182170 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182109 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182048 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //