Array 1 60031-59575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRO010000011.1 Shigella sonnei strain MSK.19.96 AJCEPDDP_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60030 29 100.0 32 ............................. GCGGCTGGGGTGGGCTGGTCGGCGATGCTTGC 59969 29 100.0 32 ............................. GGCCGGACGGTAGCAGCAATTTTACGGCCATT 59908 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59847 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59786 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 59725 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 59664 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59603 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGTTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87073-85579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRO010000011.1 Shigella sonnei strain MSK.19.96 AJCEPDDP_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87072 29 100.0 32 ............................. TAAATTACCCACAGAATCAGAATCTAAGACGG 87011 29 100.0 32 ............................. GTCGCCGTTCCGGCGGTATGTGTCTGAAGCGC 86950 29 100.0 32 ............................. GCGGTTATCGCTGAATCCACTATTCAGGTGAA 86889 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 86828 29 100.0 32 ............................. GGCTTATTAATATCACCCTTACCGACTACGGC 86767 29 100.0 32 ............................. GGGCCGACAAAACGTGTCAGAGTTCTGAAATT 86706 29 100.0 32 ............................. CCCGCAACAACTCAGGGAACCAGACACTAAAC 86645 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 86584 29 100.0 32 ............................. TCTGGTGTTTCTCTCGATGCGCGATATGTCTA 86523 29 100.0 32 ............................. ATATCTGTCCTGTCCATGATCGGGAATACTCT 86462 29 100.0 32 ............................. CTTGTACTCCAGAAAAAATATAGAAGCGCCAT 86401 29 100.0 32 ............................. CCAGCGAACATTGACTCAGATGCCATTGCTGG 86340 29 100.0 32 ............................. CCGCTAATGCGCGTATCTCATGGAAGGTTGGA 86279 29 100.0 32 ............................. TTTTTGTACGTCATGATGCGTCTCCATGTAGC 86218 29 100.0 33 ............................. CCCAGCCTGGCTTTCGGGTAAATCACCTAAAAC 86156 29 100.0 32 ............................. ATTACGGAGCTGGGAATGACTCCCAGCAAAAT 86095 29 100.0 32 ............................. TGGTACGGAACATGCTGTCTATATTTCGACCA 86034 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATATACACACGATT 85973 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 85912 29 100.0 32 ............................. ACGAATCTGAACAGACGTGTGACTTAATCGTT 85851 29 100.0 32 ............................. AAAAAACAGTGGTACTACCGCCCCGCCGAACA 85790 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 85729 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 85668 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 85607 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //