Array 1 164675-163671 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXTX01000001.1 Andreprevotia sp. IGB-42 IGB42_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164674 29 100.0 32 ............................. GGAAGGGTGGCCAGATTGCCTATCAGGATGCC 164613 29 100.0 32 ............................. GTATCCATGCGTTATTACGCAGGCTTGCTCAT 164552 29 100.0 32 ............................. CCAACGACTTTGGCGCGATACGTGGCGGTCAT 164491 29 100.0 32 ............................. GGCTTGTCAGATGCGCTTGATTGGCAGGCGTA 164430 29 100.0 32 ............................. GTATTTTCGTCATGAAATACGGTACACAGGCA 164369 29 100.0 32 ............................. CTGTTAGCCCGGTGCCTTTGGTGGCTGTTCCG 164308 29 100.0 32 ............................. GCGATTGTTGGCACGGCGGTGGCAATGGTGGG 164247 29 100.0 33 ............................. CTGGACATTACGTCCGCTTCTTGTTGCGTCATC 164185 28 96.6 32 .................-........... GAAAAAGATCAGGTGGAATTGACGGTGAAGAT 164125 29 100.0 32 ............................. TGTTCTAAATTAGCGGGAAAGAAAATTCCGGG 164064 29 100.0 32 ............................. GGCTGGACCGGCTGTCTCGCGATATGGTCGAG 164003 29 96.6 32 ............................A GCGCCTTATGGCGGCCTGGTGAACGCAATGCT 163942 29 100.0 32 ............................. CCCACCGGCGCCCAAGGCGCTCAGCAGGTAAT 163881 29 100.0 32 ............................. GAACTGGCCGTGTCTTGGGCGTATTCGTGATC 163820 28 96.6 32 .................-........... CTGCAGATCGACAACATCGGCCGCGAGCTGAC 163760 29 100.0 32 ............................. ACTACGCCGCCGAAGCGCTCGACCTGAATGAG 163699 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 CTGTTCCCCGCGAACGCGGGGATGAACCG # Left flank : TGCTACAAAGCCCGGGTTAGTTTCTCTTGCATTGATCGCTTTCTGCAAGCTGCCGATGTGTCAAAAGCAGTGCGCTGGGCAGGTTTTCAGGTGATTCATTCGCCAGACATTGACCTGCCCTTGCACTGGCAAGAATGAATGGTGTTGGACTTGCATTTTTGCTGAATAAGGGATGATATTGTCATGGAGCGAAAGGGTGCCGATTGCCTTGCAGGCATTGCTGCCTGTATCTGCGGATGATTACCAGGCATCTGCTTTACCGATCCCCTGATAGTGCTGCTTGAAGGGAATCATCCGCTGGCGTGCCCAGAGCAGTACCGATAACCCCGGTGGGGGCTCACGCTAGCAAGTTGCTGTTTTTTTGCAGCAATGCGGAGTGGTTCAACCCACGCTTGTAGCGACATTCTTTAAAAATCCGTAGTGTGTGAAAGCAAGCTTGAAAGCTTGGTAGTATTTCGAGGTCCATAATAATCTATATGGGTCAATGACTTGGTTTTAGT # Right flank : TCGGACAGGAAAGTAGCCAGTTACTTCCGCACTGCAGGGAAATCAGCGTCAAGGGCGGGTGCTGACATGAACCACCCGCCCGCAAAAAACCAAAACCCCGCATCCTGTGAAGGAATACGGGGTTTTGGCTGCATTGCAAGCAGCAAGTCAGCTCGGGACCTTGCTGCTTATTCCATACGGTAGTTCGGTGCTTCCTTGGTGATCTGCACATCATGCACGTGCGATTCACGGATACCGGCAGAGGTGATCTGCACGAACTCGGCTTTGGCGTGCATGTCGGCGATGCTGGCGCAGCCCACATAGCCCATGGAAGAGCGGATGCCGCCAACCAGCTGGTGCACGATGGCGGTCAGCGGGCCCTTGTACGGTACGCGGCCTTCGATGCCTTCCGGCACCAGCTTTTCCACGTTGGCGGTGTTTTCTTCCTGGAAATAACGGTCGGACGAGCCTTGCTGCATGGCGCCCAGCGAGCCCATGCCGCGATAGCTCTTGTAAGAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGAACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 322404-321826 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXTX01000004.1 Andreprevotia sp. IGB-42 IGB42_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 322403 29 100.0 32 ............................. CGCGTATTGCCGAGTTGGAGCAGCGCCGGGAG 322342 29 100.0 32 ............................. ACCCCGAAACGCACATCAACCTGTTCCGTGGG 322281 29 100.0 32 ............................. CCGGCAGCGGCGTGCGTCAGCTCGTGGGCCAG 322220 29 100.0 32 ............................. TGGTCTTCCTCGCCCAGCCTTTCGGTGGCGAT 322159 29 100.0 32 ............................. GCGCCACCTGCGATAGAACCGGCTGGCGGTCG 322098 29 100.0 32 ............................. GTGTTGGAAGCAGCAGCCAAAGACCTGGTGGA 322037 29 100.0 32 ............................. AAACAACGCCAGGCGATCTGGAAAAAACTCGG 321976 29 100.0 32 ............................. CGGCGTTTTACCGTGGTCAGGTTGATATGTTC 321915 29 100.0 32 ............................. GATTCCGGCGCGGTGGAAGAAGGTGCCGACGT 321854 29 75.9 0 T....T..T...TT.A.....C....... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 CTGTTCCCCGCACCAGCGGGGATGAACCG # Left flank : GCGACCTGATCGCGGATTTCCAGCAGTCCATCCAGCCGCGGGATAGGGGCTACGCGCAGGATGAACCCAGCGCCACGCTGCAATGCAACGCGTGGCTGGCCGACAACCGCAAAAAGGCACTACTGGCGGATATCGGCGTGGGGGTCGATCGACCAGGCACTGCTGGTTGCGTTGCCGGTACGGCATCAGGCGCTGCGGCTGCTGGGATTGGCGCGCAAGGTGCTGATCATTGATGAAGTCCACGCGTATGACCCGTATATGATCGAGCTGCTGGAAAAACTGCTCGCCGCACATGCGCGGCAGGGCGGGTCTGCCATCCTGTTGTCCGCGACCGTACCCGCCACCACCCGTGCCAAACTGCTGTCTGCCTTCCAGCGTGGGCTGGGCGTTGACGCACCGATTTCGCCAGATGCACGTTACCCCCTTGCCACGCAGGTCACTGGCGATGTGGTCGAAACGCATGCCTGCGCCACGCGTGAACAGGTGAAGCGCCGGGTGGA # Right flank : CACTCCGAGGTATAACCAAGTGGCGCCCAGTCCCCTAATAAACTGGTCGCCATTCGGGCCCGCCGCGCCCATGTCGCCGCGCTCCAGCAACTTACATCCCGGATGTTTAAGGCATAATTATCCTCACACCCGCGGTACCCCGGTTCCGCGCCCGATTTTCTGGCTTTTTATTCATTTTCAGGGGTTGTTAGAGCGATGAAAAAACTGTTGCTGGCCTTGTGTCTGGCCACTGGCGTTGCCCAGGCGGAAGACGTGTTGCACGTATACAACTGGAACAACTATATCGCGCCGGAAACCGTGAAGCGGTTCGAAGCGGACTGCAAGTGCCGCGTGGTGCAAGATTACTACGGCGCCATGGAAGAAATGCTGGCCAAGCTGTCGGCCGGTGCCAAGGGCTACGATGTGGTGATCCCTACCGGCTTCGCCATTCCGCCGCTCACCAAGCAAAACCTGGTGCAGCCGCTGGACAAGGCCAAGCTGCCCAACTTCAAGAACGTGAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //