Array 1 217805-214970 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYYG01000003.1 Serratia inhibens strain S40 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217804 29 100.0 32 ............................. GAGTTGGACCCGGTAGCCGGCACTGAAAACGC 217743 29 100.0 32 ............................. ATATCGTTACGCCGGGCACTACCGATCGCTTC 217682 29 100.0 32 ............................. AGCGCGCATGTTCTTTCCTTTTTTTTCCAAGG 217621 29 100.0 32 ............................. AAATCCGGGTAGCTATCGCGGATTACATCAAC 217560 29 100.0 32 ............................. TGGGATCAAAACGTTGGCGACGGCCATACCGG 217499 29 100.0 32 ............................. GCGTTTCACCTCATGACCGGCGGCAGTAGCCA 217438 29 100.0 32 ............................. ACGATGCGGTCACGAGTCCTGTGACAGCAGCA 217377 29 100.0 32 ............................. GTGATTTGTTGTTGGCCAAGGACGCGCCGTCG 217316 29 100.0 32 ............................. AGTTCTGGAAACCAGCTAATTTCCCATTAACT 217255 29 100.0 32 ............................. TGGAGCCAACGAGTTGGCCACACGCTTATTGT 217194 29 100.0 32 ............................. AGCGAATATAGTTGGTCTGCCCGAAATACGGA 217133 29 100.0 32 ............................. GGGAGTTTGCCGGTGGGCTGGATGGCACGAAT 217072 29 100.0 32 ............................. TGAAATCAATCATGCGGGTCGTTACCCGCATT 217011 29 100.0 32 ............................. GACCGTTATAACTCAGAAGAGAGCCATGCAGA 216950 29 100.0 32 ............................. CACTGCAGGGCGGCGAAATAGTCGCAAACGGA 216889 29 100.0 32 ............................. ATGGGCTACCGGCAACAGTCTCACCTGTTACC 216828 29 100.0 32 ............................. GCACATAACGAATTTACAGCTGATGGGGTACT 216767 29 96.6 32 .............T............... TGATGGTCGTTATCCCGGGCGTTAACGTAGTA 216706 29 100.0 32 ............................. TCGAAAGGAAAATCGGACACATAGCCTTGGAA 216645 29 100.0 32 ............................. AATATTTATCTTAGCGGAGTTTGTGCTTATTT 216584 29 100.0 32 ............................. TGTTCCGGTGCAGTTGTCGATTTTCGATACAT 216523 29 100.0 32 ............................. ATAGCGGCGAACCACTGGGACGGCACCACCGA 216462 29 100.0 32 ............................. GTACGAAAGGCAATCGCGCCTGGGGTGATGAT 216401 29 100.0 32 ............................. TAATCCAGCATACGGGTCATCGCCTCCATCAC 216340 29 100.0 32 ............................. TTAACGTTGCCGCCGGTCGCGCCGGCACCAAA 216279 29 100.0 32 ............................. ACAGTTGGAGAGCGGATCTACACATTGAATTA 216218 29 100.0 32 ............................. TGCAGCATGGGAAATGCCAATTGGGGAAAACA 216157 29 100.0 32 ............................. CGCATATCAGTAACGGGAACATTGTTGGCGAT 216096 29 100.0 32 ............................. CGTGCAAAAATTGAGCTGCTTTTTCTGGTGAC 216035 29 100.0 32 ............................. TTTCATACCGGCCGCGCACATCGTTCAGCACA 215974 29 100.0 32 ............................. GATGTGTCTGCCGCTCACAACTGATCCATCGT 215913 29 100.0 32 ............................. TAAAATGCCATAGGCTTTTTGGTCAATGTACA 215852 29 100.0 32 ............................. CCCGGCTTTGATTATCGCGACGTGTGGAAGGA 215791 29 100.0 32 ............................. GCCAGGAAAATCGCGTAGGCGGCATCGCCGTG 215730 29 100.0 32 ............................. TCCTATTACTACATGCTCGATGGCGCTTTTAC 215669 29 100.0 32 ............................. AATGAGGTTCCACCCACCGTCTGAATCAGTGC 215608 29 100.0 32 ............................. GGGTAGAATCAGTTACTGCATCGTTATCAACA 215547 29 100.0 32 ............................. TAGTTATCCAGATCTCTCTTGGCTCTCGTTGG 215486 29 100.0 32 ............................. ATTTTGCGGACCAGTGTGTAGGTATGCATGGC 215425 29 96.6 32 ............T................ AAACGGTCTGTATCTCCACGCCTTTACAGCCC 215364 29 100.0 32 ............................. CCAGTATTTAGCAACGTTTGCGCTACTGATGA 215303 29 100.0 32 ............................. GGGATTATTTTTGAGTTAAGCGGTGCTCTCAA 215242 29 100.0 32 ............................. CTGACGTATCCAGGTTGTTTACTAATGAGGCT 215181 29 100.0 32 ............................. GATAAGGACAACGATCAGGCGCATGGTTCCAT 215120 29 93.1 32 .C..........T................ AATCCAAGCCCCATTTTCGTGCCGGGAGTTAA 215059 29 100.0 32 ............................. TGAAGCAGAGCGAGTTCAGGCGGTGGCTTGAA 214998 29 86.2 0 .............T.....A....G...C | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATCGAGGAAGTTTTAGCAGCTGGGGAAATCGCGGTGCCCAAGCCTTTTGATGATGCACAGCCGCCAGCAATTCCGGAGCCTGTTGGTCCCGGCGACGTTGGTCACAGGAGCCGTAACTAATGGGAATGCTTGTGGTGGTGACGGAACAGGTTCCCCCAAGGCTGCGCGGTAGGCTGGCAGTCTGGTTGCTGGAGATTCGAGCTGGGGTTTATGTCGGTGATAGCTCGCGCAAAGTCCGAGAGATGATTTGGCAACAGATCACGGTACTGGCAGACGAAGGGAACGTTGTTATGGCCTGGGCGACGAATAATGAGTCAGGTTTTGATTTCCAAACCTGGGGAGAAAACCGGCGTGAGCCGGTGGATCTTGATGGACTAAGGTTGGTCTCTTTCTTACCCTTGTAAAATCAGTAGGTTATAGATCTTTAAAAACACGGAAAATTTGGTGGAATTCTAGGGGTATAAAAACTTCTATTATAACAGTTAGTTAGTTTTAGA # Right flank : TAGGCTCAAAGAAACCGATAGTATTTCTCTCCACTTGGCCACCACGGAGATCGCTGGGCCGTTACTTAACGAAGTGTGGGGCAGTGTTATTATCCTGTTGGGCGTTGACGTGGGTTTTCTGTGCAGCCTGTTCCGTAAGCGACAGGAGTCCTGATTGAGCGAGGTGCCGCATATGGCGCCTTTATTTTTTATTAGTCGTTATTTTTAAATAAATAATTAAAATAAACACGTTATTATTATTTTTTCTGGATGTTTTTGTTTTTTATTATTATTGATTTTTTTCTTATTTACCGGTAGATATTGTTTTATTGGCCGGCTGATGGTTTTTATGACTAGTTGATCTACGGTCGTATTAGTCGAATAAATAAAACACTCTATTAAAGGGAATATTACTATGTCAACGATAAGGGAATTGACGTTAGACGAGATGAAGTTGATTGGCGGTTGCGGGGATGGAAATAACGGCGGTGACCGCGACAGAACCAGCCGCGGCGCGCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227462-226823 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYYG01000003.1 Serratia inhibens strain S40 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227461 29 100.0 32 ............................. ACCTGCAGAAACAATACCAGTCCGGTGACATT 227400 29 100.0 32 ............................. GGGGGTGATCGGGATGGGGTGTGGGGGAAGGA 227339 29 100.0 32 ............................. TCGGTTTCCAAATATGGGGCAGTAGCATACAG 227278 29 100.0 32 ............................. CCCTGCTGGTCGAGATAACGCCGGTAATCGAA 227217 29 96.6 32 ............................A TTAATACGCACGGCATAAGAATCCACGCCATC 227156 29 100.0 32 ............................. CAACTACATTACTAACGCTGTGAATGGCCGAG 227095 29 100.0 32 ............................. AATGGTTAGGAAGTCGGTGCGTCCGAAGCTAG 227034 29 100.0 32 ............................. AACTGGCAGAACAGGACAACCGCGTTTACGCT 226973 29 100.0 32 ............................. AACTGGCAGAACAGGACAACCGCGTTTACGCT 226912 29 100.0 32 ............................. CGGATATGTTGGAAATCACCCTTGCCGACGAC 226851 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CACCGAATGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTTATCACCACGCCGATATTCTACCTCTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGGACCATTTCCTATTGCATCCCCTCCACCTGGGCCACCAAGGCGATCGCCGGGGTTAACCAGATGGGCTTGTCGCTTAACGAAGTGTGGGGCGATGTGGTGATGCTGCTGGTTCTGGGGATTATTTACACCTTGCTGGGCGTAGGCGTAGGTTTTATACGCAACAGCGTGGCGTTGCGCAGCCTGTTTCGCAAGCGGAGTGCATAGCGTGGGGCGGTTGTAGTATCGTCGCGATAGTAGAGTTTTCGGTGAATTTGTATTTTTGCACATACGTGGTTTTTTATTTATTAAATATCAAGTGGTTAGGTTTTTTCAAAATGGCCTAATTGTTGGTGGAATTTTATAGTCTTAAAAAATACAATTAATTCAGTTAGATAGTTTTAGT # Right flank : GTACTCCGTAATTCCCAACGGGCAGATGTCACTAATGAACTTACTACTTACGAAACCATGTATATCTGGAGGTGGGTATCTTTCAGAAAGAGTGGAACTGATATCGATCTGCTGATTGGATGTGATTTAAAACCTGTTAGACATGGTAGGTTAGTTGCATTGTTAATTATTTTATTTTCTAGTGTTTCCCATGAATTTCCTGATTACAGTTATATGGAATTTTAATTGACTCTGTGAAGCTTTTCCGGTTTGGTTTGAGATTAAGTGATTTTTTGTATTTTATAATAACTTATAGTTACCATTAACTTGTGCCGAATGTTACAACATACAATATATCGTTATTTTATCTAACAGAGATTTTTTATGGGAAGCGACATTCCTGTTAATTATATGCGCTATTGGGGAAAGGCGAAAAAAACAGACCTTTCAGAAGGCGATGATTATCACTTATTAGCCTACCATTGCCTGGATGTGGCGGCATGTGGATACCAACTGGTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //