Array 1 110984-111432 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMU01000002.1 Nitrosomonas ureae strain Nm42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110984 28 100.0 32 ............................ AATTACTTTAAAACCGACGACTGTTAAAGTAG 111044 28 100.0 32 ............................ TTGTTGATTAACTCAGGGATAAAACGATCATC 111104 28 100.0 32 ............................ GATCAGGTGGATTGGTCTTTAGTTGCTGCATG 111164 28 100.0 32 ............................ AAATTTATATCTAGCGGCTTTTTTCATAATTA 111224 28 100.0 33 ............................ CTTGCGAATCTATGGGCGGCTGTTTGCCTCATT 111285 28 100.0 32 ............................ AAGGTATGTTTTGCCCGATCCGGTTGGACTCA 111345 28 100.0 32 ............................ ACATATCCATATAATTTTACCTAAAACATCCT 111405 28 92.9 0 .................T........G. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Left flank : CACCGGTATCCGCCCGGTGCCAAGCGCCGTCAAAGGTTATACCGTTTATCAGCGCGAACAACCCAAAACCGGCCGGGAACGCTTAGCTCGGCGTTATGCTAAGCGGCACAACCTGGATTACGAAACTGCGTTCAATGGCAAGGTTGAGTTGTGTGCAAAGCACGATAATGCAACAGAGTGTCAAAAAATGTTGATGAGTTACAGCGAAATGCCGCACAAAACCATCACCACCCCGTTTATCCGGCTAAAAAGTTTAAGTAGCGGCAATACGTTCTGCTTGTGGATCAAGAAAACAGCAGTTGCTGAATTTTCTGGCGGCACTTTCAGTAGTTATGGTTTAAGTGCTTCAGTCACTGTTCCTGATTTCTGACCCATATTTTTCGTTCTTTAAAAATTAATATATAAATTAGCCAGTTGCATTTGTCGGTTTTTTGGATAGTCAAATTAAGCAAATTCCCTGTAAACTGCCAAGTAGTTGGCTTTAAGTTTTTTTATGGTCA # Right flank : AGTCTCGAAACATTAGTAAGATCAATACTAAAAGTTCGTTGCCACGTGAGCGCGAGGATAGAAACGCGCGTTATTAACTCGACGCTCAAAGGCGCCATTGGAGTAATTTAATAATAAATTGGTTTAGGTGCATTGTGAAAAAGTTTGACGTATTACAGAAAACTTAAGGACTACGAATTAACTAGCCTATTAACGATTCAATATAATTTCCAGCACAAATTTACTGCCGATATAGGCTAGTAATAATATAATGAATCCGATTAATGTCCAGCGAATTGCAATACGCCCTCGCCACCCATAGAACTGTCTACCTATCAATAATGCTGCAAAAACTCCCCAGGAGATAAAGCCAAATAGGGTTTTATGAGAAAACGTCAGCGATTGGCCAAACACTTCCTGCGAAAATACGATACCGCTCATAAGTGTCAACGTGAGTAAGATAAACCCAACCCAGATAATATGAAACAGCAATTTTTCCATTGCCAGCAACGGTGGCAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 140879-139650 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCMU01000002.1 Nitrosomonas ureae strain Nm42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140878 28 100.0 32 ............................ AATCATTGTGGTTAAAGCGGGTAAGTTTGCGG 140818 28 100.0 32 ............................ TGTTAGAGCGAACCGTGAAAAATCTTTACTCT 140758 28 100.0 33 ............................ CATTAATTTTATAGGACTATTTTAAATGGCACT 140697 28 100.0 32 ............................ TTAAAGGAATGTTCCTGCAAAGAGAAATAGCC 140637 28 100.0 32 ............................ TCTGGAGCAGCATATTTAAGTGACTTTGCATT 140577 28 100.0 32 ............................ TTTTGACTTATGGGTGAAAGAATTCTTTGGAC 140517 28 100.0 32 ............................ CATTGTCTGCGTCCATGCTTATCCGGCAAGCG 140457 28 100.0 32 ............................ GTTATAAATGCACGCTCAAATTCGGTATTTAC 140397 28 100.0 32 ............................ AAAAGATTGCCCCAGTCTTAATTATCCGCACT 140337 28 100.0 32 ............................ TACGGGCGATCATAATCTTGTGAAATCCGGCT 140277 28 100.0 32 ............................ TGCTGGAACAAGCGAGGAAGATATACAACGTA 140217 28 100.0 32 ............................ TAAAGGCTGATTTGTAACCGGATGTCTTAACT 140157 28 100.0 32 ............................ AATCAGTGTGTCGGTTGCAAAGATTGATCCAG 140097 28 100.0 32 ............................ GCTAGGAAACAGAAGGGAGCCATCCGGCCAAC 140037 28 100.0 32 ............................ GTTTGATTTTTTTACTATCGGAATGTTGGATA 139977 28 100.0 32 ............................ TAGATACAGACTTCGATAATCAAGGAAGTCCG 139917 28 100.0 32 ............................ AAATGGTAAATATATTTGATCATTTTCTTTCC 139857 28 100.0 32 ............................ TGTATGCAGTACGGCTGAAATGATTAATCCTT 139797 28 100.0 32 ............................ ATATCGTTAAGCTATTCTGATTAACCCTGTTG 139737 28 100.0 32 ............................ GTTTGGAATTCCGGTGCGTTTGCTCTCTGCTA 139677 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Left flank : CACGCTTGTCCGGTTTGATGCCACAAAATGGCTGAATCGTTTGAGTAACTATGTGCATTGCACCAATATCAGTCCTTTGCCTGAAAGACTCAAAGGCTATGCTATTTACCAACGCGAACAACCCAAGGTCAGCAAAGAGCGTTTAGCCAGACGTTATGCACGCAGACATAACATTGACTATGACACAGCCTTACTGCGTTATAGTGAAATGGTATATAGATTAATACCCACACCATTTATTCGCCTAAAGAGCTTGAGTAGTGATAACACGTTCTGTCTTTGGATTAAGAAAATAACGGTTGCAGAATCTTTCGATGACACTTTTAGTAGCTATGGTGTAAGCGCTACATCCACTGTTCCAGAATTTTAACCCATTTTTTTTGCTCTTTAAAAATTGATTTATAAATTAGCCAGTTGCATATATCATTTTTCGGAATGGTTAATCTAAACCAAATTCTCTGTGAACTGCTGTATAGCTGGCTTTGAGTTTTTTATGGTCA # Right flank : ATATGGATAATATCTTGCCAAAATAGCTTCATCAACTTCTACTCTGCCTAACAATTTGTTCTTAAGGGCAGTCTGATGACGATAAATTACTTGCCTGAAAATGCCATCCCAACGATTAATTGCGTTAGGATATTTACCCAGTAGCAGAGAGCCGTTTTGCTGGCTGGATTATCAATGTATTAACCGACTAATTTAACACTCATCATTAAATTAATTTATCGCCATTTTCAAAGTATTTTTGTAGTGGTTTTAGATACTAGTTAACTTATAAGTAAATCTTAAGAATTAGAAGCTCTAGACTAGCTTAATGTTTCTAGCTAGCCAAGAGCATTTACAATTGCGTAACCTGGTCAATTGTCGGGAAATCCTGCTACTGTCCAAGTTAATCCGCCGTTTGTTGATTTATAAATATTTTTTCTTGTAGCACCTGCAATCGTAGAATCTACCGCGTAAGTAGGTGATATCTGAAATTCAGTAAACTGAATATTTTCGTTTTCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //